Pairwise Alignments

Query, 299 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., transcriptional activator RhaS from Klebsiella michiganensis M5al

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 62/269 (23%), Positives = 115/269 (42%), Gaps = 35/269 (13%)

Query: 48  PDQRFVGNYFAGDAIGAVEHNTLLLYGPGLPHMIAG----------RQLINKAQTLHSTI 97
           P   F  ++     I  VEH T +    G P+ I+G          R L      L  T 
Sbjct: 24  PQSAFPEHHHDFHEIVIVEHGTGIHVFNGQPYTISGGSVCFIRDHDRHLYEHTDNLCLTN 83

Query: 98  IWFKQ----EWLDKLQSVLPQAQ-----ALQRLQQHASYGVRLSEQTATRVAELLANVDQ 148
           + ++      +L  L ++LPQ Q     +  R+ Q A   VR   Q   ++ E+ A+ D 
Sbjct: 84  VLYRAPDAFRFLSGLNALLPQEQEGNYLSHWRVNQSALQQVR---QIVEQMEEVGADADM 140

Query: 149 QPHSYQSLRVIESLLVMADDAQAQRLSVAPYVMTALTSNSDTHKKIQLAKQYVEQHYAQA 208
              + + +  ++ L+ +   + A+               SD   ++     ++E H+A+ 
Sbjct: 141 HAIASREILFMQLLVHLRKSSLAE-------------GASDNEARLNHLMAWLEDHFAED 187

Query: 209 IKITDLCHQLHLSESSAYRLFEKHYGMSFSEHLKQFRIGKACELLASSALPIALIAERTG 268
           I   ++  +  LS  + +R  ++  G++   +L + R+ KA  LL  S   +  IA R G
Sbjct: 188 ICWEEVAARFSLSLRTLHRQLKQQTGLTPQRYLNRVRLMKARHLLRHSDDSVTDIAYRCG 247

Query: 269 FGNLSNFNRQFKTLKTMTPREFRQRFQAV 297
           FG+ ++F+  F+     +PR+ RQ   A+
Sbjct: 248 FGDSNHFSTLFRREFAWSPRDIRQGRDAI 276