Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 754 a.a., Topoisomerase IV subunit A (EC 5.99.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  392 bits (1007), Expect = e-113
 Identities = 270/783 (34%), Positives = 423/783 (54%), Gaps = 96/783 (12%)

Query: 12  NIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVG 71
           ++ D   ++YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG D +  +KKSAR VG
Sbjct: 16  SLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKKSARTVG 75

Query: 72  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEVRMSKI 130
           DV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+S+ 
Sbjct: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135

Query: 131 AHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEV 190
           +  LL++L + T D+ PN+DGT   P VLP ++PN+L+NG +GIAVGMAT++PPHNL EV
Sbjct: 136 SEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPPHNLREV 195

Query: 191 IDGCLAYIDNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIE 249
              C+  +D    T+++L ++I GPD+PT A +I+ R  ++  Y+TGRG V MR+   +E
Sbjct: 196 ATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRTDLLKIYETGRGSVRMRAVYHVE 255

Query: 250 TDKNGKETIIVSEIPYQVNKARLIEKIAELVKEK--KVEGISALRDESDKDG-MRIVIEC 306
                   IIV+ +P+QV+ A+++E+IA +++ K  K   ++ LRDESD +   RIVI  
Sbjct: 256 DG-----DIIVTALPHQVSGAKVLEQIAAMMQAKPSKAPQVADLRDESDHENPCRIVIIP 310

Query: 307 KRDAVG-EVVLNNLYANTQLQTTF--GINMVALDNGQPKLFNLKEMLKCFVDHRREVVTR 363
               V  + ++ +L+A+T L++++   IN++ LD G+P+L NL+ +L  +++ R + V R
Sbjct: 311 VNSRVDHDALMQHLFASTDLESSYRVNINIIGLD-GKPQLKNLRALLVEWLEFRVKTVRR 369

Query: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423
           R  F L K   R H+L+GL +A  N+DE+I +IR    P                 A+++
Sbjct: 370 RLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPK----------------ASLI 413

Query: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483
           ER                     + L+E QA  ILD RL +L  LE  K+  E  +LL+E
Sbjct: 414 ER---------------------FALSEIQADYILDTRLRQLARLEEMKLRAEQDELLKE 452

Query: 484 IAALMHILASTERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVT 541
            A L  +L S  +L +++R EL      + D RR+ I   A    +   +L+  E V V 
Sbjct: 453 QAKLQALLGSEAKLKKLVRTELLKDAETYGDDRRSPIVERAEAKALSEHDLLPNEKVTVV 512

Query: 542 LSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRM 601
           LS +G+V+     D +A        +    K  D  + L    ++   +   + G++Y +
Sbjct: 513 LSEKGWVRSAKGHDIDA--------TGLSYKAGDGFKALAAGRSNQFAVFVDSTGRSYSV 564

Query: 602 KVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGD---GTVKKTS 658
             + LP  S   +G+P+   L          +L      +D+ +++   D   G V K  
Sbjct: 565 PAHTLP--SARGQGEPLTGRLTPPPGATFECVL----MPDDEGLYVIASDAGYGFVVKGE 618

Query: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESE-IMLFSKFGKVVRFKESEETAVVDEN 717
             Q  N     L++L   +   +    + D ES  +   +  G+++ FK S+        
Sbjct: 619 DLQAKNKAGKALLSLP-NNAKVIAPRPVADRESNWLASVTTEGRLLVFKISD-------- 669

Query: 718 GQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYG 777
               L + G+ +         G    G+ G ++A  ++ V+ I    EG  L +     G
Sbjct: 670 ----LPQLGKGK---------GNKIIGISGERVASREEYVTDIAVLPEGATLVLQA---G 713

Query: 778 KRT 780
           KRT
Sbjct: 714 KRT 716