Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 889 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Pseudomonas fluorescens FW300-N1B4

 Score = 1151 bits (2977), Expect = 0.0
 Identities = 586/903 (64%), Positives = 723/903 (80%), Gaps = 35/903 (3%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M +LAKEI PVNIEDEL+ SYLDYAMSVIVGRALPD RDGLKPVHRRVLFAM+ LGND+N
Sbjct: 1   MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           K YKKSARVVGDVIGKYHPHGD+AVYDTIVRMAQPFSLRY+LVDGQGNFGS+DGD+AAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTEVRM+K+AHELLADL KETVD+VPNYDGTE IPAV+PT+IPNLL+NG+SGIAVGMAT
Sbjct: 121 RYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNLGEVIDGCLA IDN  +T+DELM YIPGPDFPTAA+I+GR GII+AY+TGRG++
Sbjct: 181 NIPPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRI 240

Query: 241 YMRSKAEIET-DK-NGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKD 298
           YMR+++ IE  DK  G++ I+++E+PYQ+NKARLIEKIAELVKEKK+EGI+ LRDESDKD
Sbjct: 241 YMRARSMIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD 300

Query: 299 GMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRR 358
           GMR+VIE +R  V EV+LNNLYA TQLQ  FGIN+VAL +G+P++ NLK++L+ FV HRR
Sbjct: 301 GMRVVIELRRGEVPEVILNNLYAQTQLQAVFGINIVALIDGRPRILNLKDLLEAFVRHRR 360

Query: 359 EVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGN 418
           EVVTRRT+FELRKARER HILEG A+AL+NID +I LI+ + TP+EAKE LI+  W+   
Sbjct: 361 EVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSA 420

Query: 419 VAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYK 478
           V AM+ERAG D+ RPE L+PQYG+RDGKYFL+ +QAQAIL+LRLH+LTGLEHEK+L EY+
Sbjct: 421 VVAMVERAGADSCRPETLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQ 480

Query: 479 QLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDV 538
           ++L +I  L+ IL+S  RLMEVIREELE IRA + D RRTEI  A  D+ + ++I  E+ 
Sbjct: 481 EILNQIGELIRILSSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEER 540

Query: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598
           VVT+SH GY K Q L+ Y+AQRRGGKGKSAT +K+EDYI  LLVAN+H  +LLFS++GK 
Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600

Query: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTS 658
           Y +K Y++P ASR ARG+P+VNLLPL+ +E IT +LPV E++E  FIFMAT  GTVKKT 
Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTP 660

Query: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718
           L+ F+  R+ GLIAL L + D LI   ITDGE E+MLFS  GKV RFKE++         
Sbjct: 661 LESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKETD--------- 711

Query: 719 QPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGK 778
                           VR MGRTA GVRGM+L +G +++S+++P+    +LT +  G+GK
Sbjct: 712 ----------------VRAMGRTARGVRGMRLPEGQKLISMLIPEEGSQILTASARGFGK 755

Query: 779 RTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQ 838
           RT+++E+P   RG QGV+++  +ERNG +VGAVQV +G+E M+I++ GTLVRTRV EVS 
Sbjct: 756 RTAITEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVDEVSS 815

Query: 839 VGRNTQGVTLIRTSEGESVVGLQRI---DEIEESELP----EGEEALVENDAPVAQDDDG 891
           +GRNTQGVTLI+ +  E++VGL+R+    E+E  EL     EGEE  V  D  V  DD  
Sbjct: 816 LGRNTQGVTLIKLASDETLVGLERVQEPSEVEGEELEGEGLEGEEGAV-FDGEVVIDDVA 874

Query: 892 EQE 894
           E +
Sbjct: 875 EDQ 877