Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 750 a.a., DNA topoisomerase IV, A subunit, proteobacterial from Pseudomonas stutzeri RCH2

 Score =  394 bits (1011), Expect = e-113
 Identities = 247/673 (36%), Positives = 384/673 (57%), Gaps = 68/673 (10%)

Query: 12  NIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVG 71
           ++ D    +YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG + +  +KKSAR VG
Sbjct: 16  SLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLNADAKHKKSARTVG 75

Query: 72  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMSKI 130
           DV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+S+ 
Sbjct: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135

Query: 131 AHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEV 190
           +  LL++L + TV++VPN+DGT   PA LP ++PNLL+NG +GIAVGMAT++PPHNL EV
Sbjct: 136 SEVLLSELGQGTVEWVPNFDGTLDEPATLPARLPNLLLNGTTGIAVGMATDVPPHNLREV 195

Query: 191 IDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSKAEIE 249
              C+  +D  + ++++L +++ GPDFPT A +I+ R  ++  Y+TGRG V MR+   +E
Sbjct: 196 AAACVRLLDEPSASVEQLCEHVRGPDFPTEAEIITPRADLLKIYETGRGSVRMRAVYRVE 255

Query: 250 TDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKR 308
                   I+V+ +P+QV+ ++++E+IA  ++ KK+  ++ LRDESD +   RIVI  + 
Sbjct: 256 DGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPCRIVIIPRS 310

Query: 309 DAVG-EVVLNNLYANTQLQTTFGIN--MVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365
           + V  E ++ +L+A T L++++ +N  ++ LD G+P++ NL+ +L  ++ +R   V RR 
Sbjct: 311 NRVDVEGLMQHLFATTDLESSYRVNANVIGLD-GRPQVKNLRTLLSEWLTYRIGTVRRRL 369

Query: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425
            F L K  +R H+LEGL +A  N+DE+I +IR   T  + K  L+AR             
Sbjct: 370 QFRLDKVEKRLHLLEGLLVAFLNLDEVIHIIR---TEDQPKPVLMAR------------- 413

Query: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485
                                + L+E QA  ILD RL +L  LE  KI  E  +L +E  
Sbjct: 414 ---------------------FELSELQADYILDTRLRQLARLEEMKIRGEQDELAKERE 452

Query: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVTLS 543
            L+ +L S  +L +++R+EL A    + DARR+ I   A    +   EL+  E V V +S
Sbjct: 453 KLLALLGSEAKLKKLVRKELLADAETYGDARRSPIVERAEARALSENELLPSEPVTVVIS 512

Query: 544 HEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKV 603
            +G+ +     D +A        +    K  D  +      ++   +   + G++Y +  
Sbjct: 513 EKGWARCAKGHDIDA--------TGLSYKAGDGFKTAAAGRSNQYAVFIDSTGRSYSLAA 564

Query: 604 YQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGD---GTVKKTSLD 660
           + LP  S   +G+P+   L          +L      ED  +++   D   G V K    
Sbjct: 565 HSLP--SARGQGEPLTGRLAPPPGASFECVL----LPEDDALYVIASDAGYGFVVKGEDL 618

Query: 661 QFANVRANGLIAL 673
           Q  N     L++L
Sbjct: 619 QAKNKAGKALLSL 631