Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 747 a.a., Topoisomerase IV subunit A (EC 5.99.1.-) from Xanthomonas campestris pv. campestris strain 8004

 Score =  376 bits (966), Expect = e-108
 Identities = 227/607 (37%), Positives = 353/607 (58%), Gaps = 61/607 (10%)

Query: 20  SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79
           +YLDY+M V++ RALP + DGLKPV RR++FAM+ LG +     KKSAR VGDVIGKYHP
Sbjct: 24  AYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTVGDVIGKYHP 83

Query: 80  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMSKIAHELLADL 138
           HGDSA Y+ +V MAQPFS RY L++GQGNFGS D   S AAMRYTE +++ IA  LL ++
Sbjct: 84  HGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTPIAEVLLGEI 143

Query: 139 DKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYI 198
            + T D+  N+DGT + P  LP ++P+LL+NG +GIAVGMAT++PPHNL E++   L  +
Sbjct: 144 SQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNEIVSALLHLL 203

Query: 199 DNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKET 257
           D+   T+ +L +++ GPD+PT A +I+    +   Y+TG G V  R+     T K     
Sbjct: 204 DDPDATVAQLCEHVLGPDYPTNAEIITPVADLRAIYETGHGSVRARA-----TYKKEHAN 258

Query: 258 IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKRDAV-GEVV 315
           I++  +PYQV+ +++IE+IA+ ++ KK+  +  +RDESD    +R+V+  + + V  E +
Sbjct: 259 IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPRSNRVDAEQL 318

Query: 316 LNNLYANTQLQTTFGINM--VALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKAR 373
           + +L+  T L+ ++ +N+  + LD G+P++ NLK +L  ++  R + VTRR    L+K  
Sbjct: 319 MGHLFVTTDLERSYRVNLNVIGLD-GRPQVKNLKHLLSEWLTFRSDTVTRRLNHRLQKVE 377

Query: 374 ERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARP 433
            R H+LEGL +A  N+DE+I ++R    P   K  LIAR                     
Sbjct: 378 RRLHLLEGLLIAFLNLDEVIRIVRSEDEP---KPVLIAR--------------------- 413

Query: 434 EWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILAS 493
                        + L+E+QA+ IL+ +L +L  LE  KI  E + L +E   ++ IL S
Sbjct: 414 -------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKEREQILSILGS 460

Query: 494 TERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVTLSHEGYVKYQ 551
             +L ++I++EL A    F DARR+ +    A   ID  E++A E + V LS +G+V+  
Sbjct: 461 KTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVR-- 518

Query: 552 LLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR 611
                 A +      +    ++ D +   + + +  ++    + G+ Y   V+ LP  S 
Sbjct: 519 ------AAKGHEVDPAGMSYRDGDGLLAAVRSRSTYHVAFLDSDGRAYSTLVHTLP--SA 570

Query: 612 TARGKPI 618
              G+P+
Sbjct: 571 RGNGEPL 577