Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 751 a.a., DNA topoisomerase IV subunit A from Pseudomonas syringae pv. syringae B728a

 Score =  397 bits (1020), Expect = e-114
 Identities = 256/673 (38%), Positives = 381/673 (56%), Gaps = 68/673 (10%)

Query: 12  NIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVG 71
           ++ D    +YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG   +  +KKSAR VG
Sbjct: 16  SLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKSARTVG 75

Query: 72  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMSKI 130
           DV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+S+ 
Sbjct: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135

Query: 131 AHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEV 190
           +  LL++L + T D+VPN+DGT   PAVLP ++PN+L+NG +GIAVGMAT++PPHNL EV
Sbjct: 136 SEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREV 195

Query: 191 IDGCLAYIDNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIE 249
              C+  +D+   T+ EL ++I GPD+PT A +I+ R  ++  Y+TGRG V MR+   IE
Sbjct: 196 ASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMRAVYRIE 255

Query: 250 TDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKR 308
                   IIV+ +P+QV+ A+++E+IA  ++ KK+  ++ LRDESD +   RIVI  + 
Sbjct: 256 DG-----DIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPRS 310

Query: 309 DAVG-EVVLNNLYANTQLQTTF--GINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365
           + V  + ++ +L+A T+L++++   IN++ LD G+P+L NLK +L  ++  R   V RR 
Sbjct: 311 NRVELDELMQHLFATTELESSYRVNINIIGLD-GKPQLKNLKTLLGEWLTFRIGTVRRRL 369

Query: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425
            F L K   R H+L+GL  A  N+DE+I +IR A  P   K  LIAR             
Sbjct: 370 QFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR------------- 413

Query: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485
                                + L+E QA  ILD RL +L  LE  K+  E   L +E A
Sbjct: 414 ---------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQA 452

Query: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATH--DIDMEELIAREDVVVTLS 543
            L+ +L+S  +L +++R EL A    + D RR+ I A      +   EL+  E V V LS
Sbjct: 453 KLLALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENELMPTEPVTVVLS 512

Query: 544 HEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKV 603
            +G+V+     D +A        +    K  D  +   +  ++   +   + G++Y +  
Sbjct: 513 EKGWVRCAKGHDIDA--------TGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAA 564

Query: 604 YQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGD---GTVKKTSLD 660
           + LP  S   +G+P+   L          +L      ED  +++   D   G V K    
Sbjct: 565 HTLP--SARGQGEPLTGKLQPPPGATFECVL----LPEDDALYVIASDAGYGFVVKGEDL 618

Query: 661 QFANVRANGLIAL 673
           Q  N     L++L
Sbjct: 619 QAKNKAGKALLSL 631