Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 860 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Synechocystis sp000284455 PCC 6803

 Score =  721 bits (1862), Expect = 0.0
 Identities = 396/914 (43%), Positives = 557/914 (60%), Gaps = 94/914 (10%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M+D    +   ++ +E+  SYL+YAMSVIVGRALPD RDGLKPVHRR+L+AM  LG   +
Sbjct: 1   MTDSPDRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPD 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           + ++K ARVVG+V+GKYHPHGD+AVYD +VRMAQ FS+R  L+DG GNFGS+D D  AAM
Sbjct: 61  RPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAM 120

Query: 121 RYTEVRMSKIA-HELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMA 179
           RYTE R+  ++ + LL D++ ETVD++ N+DG++Q P VLP +IP LLING+SGIAVGMA
Sbjct: 121 RYTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMA 180

Query: 180 TNIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGK 239
           TNIPPHNLGEVIDG +A I N  IT  ELM  IPGPDFPT A I GR GI +AY TGRG 
Sbjct: 181 TNIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGS 240

Query: 240 VYMRSKAEIETDKN----GKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDES 295
           + MR  A IET ++     ++ IIV+E+PYQ NKA LIE+IA+LV +KK++GI+ +RDES
Sbjct: 241 ITMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDES 300

Query: 296 DKDGMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVD 355
           D+DGMRIVIE KRDA   VVLNNLY  T +Q+ FG N++AL NG P++  +K+ L  F +
Sbjct: 301 DRDGMRIVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWE 360

Query: 356 HRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWD 415
            R E +TRRT +ELRKA ER H+L+GL +AL N+D +I LIR AA  A AK  L+     
Sbjct: 361 FRIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVEG--- 417

Query: 416 LGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILD 475
                                          + L+E QA AIL ++L +LT LE +KI  
Sbjct: 418 -------------------------------FSLSEVQADAILQMQLRRLTALEADKITA 446

Query: 476 EYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAR 535
           E+ +L  +IA    ILA  ER+  +I EELE I+A  +  RRT I     ++   +LIA 
Sbjct: 447 EHDELQTKIADFQDILARRERVNAIIEEELEQIKAIHATPRRTVIVQEDGELIDTDLIAN 506

Query: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595
           +  ++ L+ +GY+K    S +  Q R  +GK+A K+K++D +E  L    HD +L FS R
Sbjct: 507 DQALILLTEQGYIKRMPASTFGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDR 566

Query: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655
           G  Y +  YQ+P+ASRTARG PIV +LP+ ++E+IT+++ V+EF +D +  M T  G +K
Sbjct: 567 GVVYSLNAYQIPIASRTARGVPIVQMLPIPKDEKITSLVSVSEFDDDTYFIMLTKQGYIK 626

Query: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715
           KT+L  F+N+RANGLIA++L + D L  V +   E  +++ S+ G  + FK  ++     
Sbjct: 627 KTALSAFSNIRANGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDE---- 682

Query: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTE---------- 765
                              +R +GR   GV+ M+L  GD ++S+ +  ++          
Sbjct: 683 -------------------LRALGRATRGVKSMRLRSGDALISMDILPSQVVANIAVGSE 723

Query: 766 --------GD--------------VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSER 803
                   GD              +L VT  G+GKR  + ++  + R   GV +I+   +
Sbjct: 724 DEPDEDLGGDTDAILEESDNPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSK 783

Query: 804 NGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRI 863
           +  +V    V   DE M++TN G ++R  V ++S   R+  GV + R    +++  +  +
Sbjct: 784 DDQLVALHVVNADDELMIVTNRGIIIRQSVNDISPQSRSATGVRVQRLDADDAIAAVALV 843

Query: 864 DEIEESELPEGEEA 877
               E EL E  E+
Sbjct: 844 PPSGEEELAEMSES 857



 Score = 38.5 bits (88), Expect = 2e-06
 Identities = 53/266 (19%), Positives = 117/266 (43%), Gaps = 40/266 (15%)

Query: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKES----EETAVV 714
           L+Q   + A     + ++++  LI  D+   +  ++L ++ G + R   S    +  A  
Sbjct: 476 LEQIKAIHATPRRTVIVQEDGELIDTDLIANDQALILLTEQGYIKRMPASTFGTQNRATR 535

Query: 715 DENGQPVLDENG---------QPEIKFKGVRPM------------GRTAAGVRGMKLAD- 752
            +    + D++G           ++ F   R +             RTA GV  +++   
Sbjct: 536 GKAAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTARGVPIVQMLPI 595

Query: 753 -GDQVVSLIVPKTEGD----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSV 807
             D+ ++ +V  +E D     + +T+ GY K+T+LS +        G+++I + E  G  
Sbjct: 596 PKDEKITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAF--SNIRANGLIAISLVE--GDQ 651

Query: 808 VGAVQVAEGDEFMMI-TNAGTLVRTRVA--EVSQVGRNTQGVTLIRTSEGESVVGLQRID 864
           +  V++A+ ++ ++I +  G  +  +    E+  +GR T+GV  +R   G++++ +  + 
Sbjct: 652 LRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATRGVKSMRLRSGDALISMDILP 711

Query: 865 EIEESELPEGEEALVENDAPVAQDDD 890
               + +  G E   E D  +  D D
Sbjct: 712 SQVVANIAVGSED--EPDEDLGGDTD 735