Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 920 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Synechocystis sp000284455 PCC 6803

 Score =  440 bits (1131), Expect = e-127
 Identities = 235/521 (45%), Positives = 332/521 (63%), Gaps = 41/521 (7%)

Query: 7   EITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66
           +I P ++ +E+  SYL+YAMSVIVGRALPDVRDGLKPVHRR+L+AM  LG   ++ ++K 
Sbjct: 10  QIIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKC 69

Query: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126
           ARVVGDV+GKYHPHGD +VYD +VRM Q FS RY L+ G GNFGS+D D  AAMRYTE R
Sbjct: 70  ARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 129

Query: 127 MSKIA-HELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185
           ++ IA   +L  + +  VD+  N+D +++ P V+P ++P LL+NG SGIAVGMAT+IPPH
Sbjct: 130 LAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPH 189

Query: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245
           NLGEV+DG +  I+   ++  EL   IPGPDFPT   I   +GI+ AY+TGRG + +R  
Sbjct: 190 NLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEGILQAYQTGRGLIPVRGV 249

Query: 246 AEIETDKNGKE------TIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
           + IET +  K+       I+++E+P+QVNKA  IEKIA LV + K++GIS LRDESD+ G
Sbjct: 250 SHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTG 309

Query: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
           MR+VIE KRDA    +L  LY  T LQ+ FG+  +AL N QP   +L+++L+ F+  R +
Sbjct: 310 MRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQMSLRQILQEFLQFRED 369

Query: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
            + R+   EL + R R  +L GL + L N+D +IE++R AA    AK             
Sbjct: 370 TLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAK------------- 416

Query: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
             + ER G                     ++ QQ  AIL + + ++TGLE EK+  E+  
Sbjct: 417 IQLQERLG---------------------ISLQQGDAILGMPMRRITGLEREKLQQEHTD 455

Query: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEI 520
           L + I  L  ++   +  ++ +++EL  ++  F+D RRT+I
Sbjct: 456 LAQRIEQLETLIGDRQERLKALKKELRGLKKKFADERRTKI 496



 Score = 42.0 bits (97), Expect = 2e-07
 Identities = 50/283 (17%), Positives = 109/283 (38%), Gaps = 29/283 (10%)

Query: 587 DNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAI-----LPVTEFSE 641
           + +++    GK + + +  +P  + T    P++ +LP       T +     LP  E  +
Sbjct: 649 ETLIVIGDHGKAFPVAIADIPPLAVTRI--PLLQILPKSAQRDATTVTFQGFLPPPEQPQ 706

Query: 642 DKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGK 701
           D  + + +  G VK  +  +   +   GL  + L++ D L             L +    
Sbjct: 707 D--LLLVSQQGRVKLLAGQELQELGPRGLSLMKLKNGDLL---------QFAQLVTPVNP 755

Query: 702 VVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIV 761
                  +   +   NG+ +  +  Q      G+     +A G   M+L   + +V +++
Sbjct: 756 ASAQNPGKNLVIATSNGRLLRFDPAQV-----GLTCSSPSAQGQEAMRLRATESLVGVLM 810

Query: 762 PKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDE--- 818
                 VL +T+ GYGK+  L+       G  G   ++ + +   ++  V   +G +   
Sbjct: 811 ASPGDRVLLLTQAGYGKQLDLASVRLGNFGELGTTVMQFTSKADRLLTMVAANQGAQSPQ 870

Query: 819 ---FMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVV 858
              +   +N   L   +  +    G++  G  L+  +EGE ++
Sbjct: 871 SSTYDFYSNQQRLHSVQADQFQPWGKDGFGDRLVDLNEGEHLI 913