Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., DNA topoisomerase IV subunit A from Synechococcus elongatus PCC 7942

 Score =  485 bits (1249), Expect = e-141
 Identities = 313/903 (34%), Positives = 478/903 (52%), Gaps = 118/903 (13%)

Query: 5   AKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYK 64
           A  I P  +  E++ SYL+YAMSVIVGRALPD RDGLKPV RR+L+AM+ LG   ++ ++
Sbjct: 10  ADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPFR 69

Query: 65  KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 124
           KSARVVGDV+GKYHPHGD AVYD +VR+ Q FS RY L+ G GNFGSID D  AAMRYTE
Sbjct: 70  KSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPPAAMRYTE 129

Query: 125 VRMSKIAH-ELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIP 183
            R++ ++H  LL ++ +ETVD+V N+D ++Q P+VLP ++P LL+NG SGIAVGMATNIP
Sbjct: 130 TRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATNIP 189

Query: 184 PHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMR 243
           PHNLGE++D  +A ID   ++  +L+ Y+PGPDFPT   + G +GI+DAY  GRG + +R
Sbjct: 190 PHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILDAYLEGRGSIPVR 249

Query: 244 SKAEIETDKNGK-----ETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKD 298
             A IE  + GK       IIV+E+PYQV+KA  IEK+A+LV + K++GI+ +RDESD++
Sbjct: 250 GIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESDRE 309

Query: 299 GMRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRR 358
           GMR+VIE +RDA  + VL  LY  T LQ+ FG  ++A+  GQP+  +LK++L+ F+  R 
Sbjct: 310 GMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSLKQLLEQFLSFRE 369

Query: 359 EVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGN 418
             + RR   EL +   R  ILEGL  +L+++D +IE++R++               D G 
Sbjct: 370 GTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSP--------------DGGT 415

Query: 419 VAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYK 478
             A L+                      + L E+QA A+L + + ++T LE E++  E  
Sbjct: 416 ARARLQV--------------------HFDLNERQADAVLSMPMRRITSLEQEQLQQEAA 455

Query: 479 QLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEI------------------ 520
            L E+ A L  +L     L++ ++++L  ++  F   RRT +                  
Sbjct: 456 NLREQQARLQTLLGDRPTLLKALKKDLRDLKRRFGSPRRTRLPEIPPEAIAAPRQVTAPV 515

Query: 521 ------TAATHDIDMEELIAREDVVVTLSHEGYV----------KYQLLSDYEAQRRGG- 563
                 T AT      ELI        +     V           +  LSD E  +    
Sbjct: 516 APISAPTPATAGPIQGELIFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAASA 575

Query: 564 -------KGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGK 616
                  K KS  + +  D+ + L  A+   ++L+ +  G+ YR  +       R     
Sbjct: 576 TELEPWLKAKSGAQ-ERTDFPKVLQWADPRQDLLVITAEGRAYRRSL-------REVHPG 627

Query: 617 PIVNLLPL-EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNL 675
           PI NLLP   ++  I A L +   SE++ + + +  G VK+ +L + A +   GL  L L
Sbjct: 628 PIANLLPTGRQSTAIAATLLLPLASEERSLLLLSSQGRVKRLALTELAEISNRGLQLLKL 687

Query: 676 RDEDSLIGVDITDGESEIMLFSKFGKVVRFKESE-ETAVVDENGQPVLDENGQPEIKFKG 734
            +E+ +    +   + E++L S  G+++R   SE   A     GQP              
Sbjct: 688 AEEEIIQAACLCAPQQEVLLGSSGGRLLRLSLSELPLASRISRGQP-------------- 733

Query: 735 VRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQG 794
                      R ++L +G+Q +  +   +  D+L V+  G  KR  L        G  G
Sbjct: 734 -----------RLLRLREGEQPLGCLSLPSGQDLLLVSTLGLVKRLPLGLLRLCRAGDLG 782

Query: 795 VVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG 854
             + + +++   ++ A+  A      +  +   L +  ++ ++  G + +G TL      
Sbjct: 783 NNAFRFTDKRDRLI-ALLPAPSQGLAIFASDQRLWQRSISTIAVTGTDAEGQTLFNLRST 841

Query: 855 ESV 857
           E++
Sbjct: 842 ETL 844