Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 856 a.a., DNA gyrase subunit A from Synechococcus elongatus PCC 7942

 Score =  712 bits (1838), Expect = 0.0
 Identities = 400/909 (44%), Positives = 550/909 (60%), Gaps = 88/909 (9%)

Query: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65
           + I   ++ +E+  SYL+YAMSVIVGRALPD RDGLKPVHRR+L+AM  LG   ++ ++K
Sbjct: 5   ERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRK 64

Query: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125
            ARVVG+V+GKYHPHGD+AVYD +VRMAQ FS+R  L+DG GNFGSID D  AAMRYTE 
Sbjct: 65  CARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYTES 124

Query: 126 RMSKIAHE-LLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 184
           R+  +  + LL D++ ETVD+  N+DG++Q P VLP ++P LL+NG+SGIAVGMATNIPP
Sbjct: 125 RLKPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIPP 184

Query: 185 HNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRS 244
           HN  E+I G +A I N  I+  ELM +IPGPDFPT   + G  GI DAY TG+G + MR 
Sbjct: 185 HNPTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVLGSAGIRDAYLTGKGSITMRG 244

Query: 245 KAEIET----DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGM 300
            A I+T     +  ++ II++E+PYQ NKA LIE+IAE+V EK++EGIS +RDESD+DGM
Sbjct: 245 VATIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRDGM 304

Query: 301 RIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREV 360
           RIVIE KRDA  +VVLNNLY  T LQ+ F  NM+AL +G+P L  LK  L+ F+D R E 
Sbjct: 305 RIVIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVDGEPVLLTLKRSLEVFLDFRIET 364

Query: 361 VTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVA 420
           + RRT +ELRKA ER H+L+GL +AL N+D IIELIRR+A    AK+ LI          
Sbjct: 365 IERRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQELI---------- 414

Query: 421 AMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQL 480
                                     Y L+E Q+ AIL ++L +LT LE EKI  E++ L
Sbjct: 415 ------------------------DVYGLSEVQSDAILQMQLRRLTALEAEKIEQEHQDL 450

Query: 481 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVV 540
              I     ILA  ER++E+I  ELE ++  F + RRT +  A  +++  +LIA E  ++
Sbjct: 451 QRRIEDYRDILARRERVLEIIETELEQLQQRFQEPRRTTLLEADGELETIDLIANEKSIL 510

Query: 541 TLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYR 600
            L+ +GY+K   ++++ AQ RG +GK+  K K++D +E  L    HDNIL FS RG  Y 
Sbjct: 511 LLTQQGYIKRMPVNEFTAQSRGTRGKAGAKTKDDDSVEHFLTCCDHDNILFFSDRGVVYN 570

Query: 601 MKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLD 660
           +  Y++P ASR ARG PIV LLP+   ERIT+I+PV+ FS+D+++ M T  G +KKT+L 
Sbjct: 571 LPAYRIPAASRNARGVPIVQLLPIPREERITSIVPVSAFSDDEYLVMLTQGGYIKKTALS 630

Query: 661 QFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQP 720
            FAN+R+NGLIA+ L + D L  V +   E  I++ S+ G  + F+ S +          
Sbjct: 631 AFANIRSNGLIAIALSEGDQLRWVRLAKPEDSILIGSRKGMTIHFRASHD---------- 680

Query: 721 VLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKT-------EGD----- 767
                         +RP+GR   GVR M L  GD ++S+ ++P +        GD     
Sbjct: 681 -------------DLRPLGRATRGVRAMSLRSGDTLISMDVLPASLTANMTETGDEDEAD 727

Query: 768 ------------VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAE 815
                       VL VT  G GKR  + ++  + R   G+ +IK   +   +V    V  
Sbjct: 728 DAVEVVASPGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKFRSKQDELVSLRIVES 787

Query: 816 GDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGE 875
           GDE +MI+    ++R     + Q  R   GV + R    + +  +  +   EE EL E  
Sbjct: 788 GDELVMISQRSVIIRQASDAIPQQSRAATGVRVQRLDADDVLAAVALVPPGEE-ELDETS 846

Query: 876 EALVENDAP 884
           E  + +D P
Sbjct: 847 EDAIASDEP 855