Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 931 a.a., DNA gyrase subunit A from Sinorhizobium meliloti 1021

 Score =  815 bits (2106), Expect = 0.0
 Identities = 451/941 (47%), Positives = 602/941 (63%), Gaps = 98/941 (10%)

Query: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67
           I P++I +E++ SYLDYAMSVIV RALPDVRDGLKPVHRR+L+ M+ LG DWNK Y K A
Sbjct: 16  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127
           RV GDV+GKYHPHG++A+YD + RMAQ +SLR  L+DGQGNFGS+DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187
            K AH LL DLDK+TVD+  NYDGT   P V+P K PNLL+NGA GIAVGMATNIPPHNL
Sbjct: 136 QKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKAE 247
            EVIDGC+A IDN AI + ELM  IPGPDFPT ALI GR GI  AY+TGRG V MR +A 
Sbjct: 196 VEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQAYETGRGSVIMRGRAH 255

Query: 248 IETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECK 307
           IE  +  +E II++EIPYQVNKA +IEK+AELV+EK++EGIS LRDESD+ G R+VIE K
Sbjct: 256 IEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELK 315

Query: 308 RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIF 367
           RDA  EV+LN LY  T LQT+FG NMVAL+ G+P+   L +ML+ FV  R +VV+RRT +
Sbjct: 316 RDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKY 375

Query: 368 ELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAG 427
            LRKARERAH+L GLA+A+ANIDE+I+LIR+A  P  A+E L+ R W   +V A++    
Sbjct: 376 LLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLID 435

Query: 428 TDAARPEWLEPQYGIR-DGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAA 486
                    +P++ I  D  Y L+E+QA+AILDLRL +LT L  ++I DE  ++ EEI  
Sbjct: 436 ---------DPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKD 486

Query: 487 LMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEG 546
            + IL+S  R+M++++ EL A+R  F   RRTEI     D+D E+LIA+ED+VVT+SH G
Sbjct: 487 YLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLG 546

Query: 547 YVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQL 606
           Y+K   L+ Y AQRRGGKG+S    ++ED++ RL VANTH  +L FS+RG  Y+ KV++L
Sbjct: 547 YIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRL 606

Query: 607 PLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQFA 663
           P+ +  +RGK ++N+LPLE  ERIT I+P+ E     E+  +  +T  GTV++  L  F 
Sbjct: 607 PIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKLSDFV 666

Query: 664 NVRANGLIALNLRDE-DSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722
            V  NG IA+ L +E D ++ VD      +++L +  G+ +RF              PV 
Sbjct: 667 QVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRF--------------PVA 712

Query: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD------------- 767
           D           VR   GR + GVRG+ L DGD+++S+ IV   E +             
Sbjct: 713 D-----------VRVFAGRNSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAA 761

Query: 768 ---------------------------------------VLTVTENGYGKRTSLSEYPTK 788
                                                  +LTV+  G+GKR+S  ++ T 
Sbjct: 762 ERRALTGEEEEIVLVGEEVTNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTS 821

Query: 789 GRGTQGVVSIKVSE--RNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846
           GRG +G+ +   S+    G +V A  +   D+ M++++ G L+R  V  +    R T+GV
Sbjct: 822 GRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGV 881

Query: 847 TLIRTSEGESVVGLQRI---DEIEESELPEGEEALVENDAP 884
           T+  T++ E VV ++RI   D  EE E    E  + E ++P
Sbjct: 882 TIFSTAKDEKVVSVERITEPDGDEEIEAVGAEGVMAEPESP 922