Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 756 a.a., DNA topoisomerase IV subunit A (RefSeq) from Shewanella amazonensis SB2B

 Score =  388 bits (996), Expect = e-112
 Identities = 244/622 (39%), Positives = 365/622 (58%), Gaps = 64/622 (10%)

Query: 20  SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79
           +YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG +    +KKSAR VGDV+GKYHP
Sbjct: 24  AYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLNAQSKHKKSARTVGDVLGKYHP 83

Query: 80  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEVRMSKIAHELLADL 138
           HGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+S+ +  LL++L
Sbjct: 84  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEARLSRFSEVLLSEL 143

Query: 139 DKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYI 198
            + TVD+  N+DGT + P VLP ++P++L+NG +GIAVGMAT+IPPHN  E+   C+  I
Sbjct: 144 GQGTVDWGVNFDGTMKEPKVLPARLPHILLNGVTGIAVGMATDIPPHNARELTRACIELI 203

Query: 199 DNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKET 257
           DN A  +  LM+ +PGPD+PT A +I+    I   Y++GRG + MR+  E+E   NG+  
Sbjct: 204 DNPATELKRLMELVPGPDYPTEAEIITPADEIAKIYESGRGSIRMRAVYEME---NGE-- 258

Query: 258 IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKRDAVG-EVV 315
           +++S +P+Q + ++++E+IA  ++ KK+  ++ LRDESD +  +R+V+  + + V  E +
Sbjct: 259 VVISALPHQASSSKILEQIAAQMQAKKLPMVTDLRDESDHENPVRLVLVPRSNRVDVEQL 318

Query: 316 LNNLYANTQLQTTF--GINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKAR 373
           + +L+A T+L+ ++   +N++ LD G+PK+  LK+ML  ++  R E V RR  F L K  
Sbjct: 319 MAHLFATTELEKSYRVNLNVIGLD-GRPKVKGLKDMLAEWLVFRTETVRRRLQFRLDKVL 377

Query: 374 ERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARP 433
            R HILE L +A  NIDE+IE+IR    P   K  L+AR                     
Sbjct: 378 ARLHILEALMIAFLNIDEVIEIIRFHDEP---KAELMAR--------------------- 413

Query: 434 EWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILAS 493
                        + L+++QA+AIL+L+L  L  LE  KI  E  +L EE   L  IL S
Sbjct: 414 -------------FGLSDRQAEAILELKLRHLAKLEEMKIKAEQSELEEERNKLEQILGS 460

Query: 494 TERLMEVIREELEAIRAGFSDARRTE--ITAATHDIDMEELIAREDVVVTLSHEGYVKYQ 551
             RL  +I++ELE     + D RR+   +   +  +  +EL+  E V V LS +G+V+  
Sbjct: 461 ERRLKTLIKKELEKDAETYGDDRRSPLVVRGESRALTEQELLPTEPVTVVLSEKGWVRCA 520

Query: 552 LLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR 611
              D +A         A   K  D         ++   +   + G+ +    + LP  S 
Sbjct: 521 KGHDIDA--------GALSYKAGDGFLCAAQGRSNQQSVFIDSSGRAFSTDTHTLP--SA 570

Query: 612 TARGKPIV---NLLPLEENERI 630
            ++G+PI    NL P E  E +
Sbjct: 571 RSQGEPITTRFNLAPGETMEHV 592