Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 901 a.a., DNA gyrase subunit A (RefSeq) from Shewanella amazonensis SB2B

 Score = 1324 bits (3426), Expect = 0.0
 Identities = 668/900 (74%), Positives = 770/900 (85%), Gaps = 6/900 (0%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M+DLA  I+P+NIEDEL++SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMN L NDWN
Sbjct: 1   MTDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           K YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY LVDGQGNFGSIDGD+AAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTE+RM K+AHELLADL+KETVD+VPNYDGTEQIPAVLPTKIPNLL+NGASGIAVGMAT
Sbjct: 121 RYTEIRMEKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNL EV+ GCLA I+   ++I++LM+YIPGPDFPTAA+I+G+KGI +AY+TGRGK 
Sbjct: 181 NIPPHNLTEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAAIINGKKGIEEAYRTGRGKA 240

Query: 241 YMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGM 300
            MR++AE+E + NG+E IIV+EIPYQVNKARLIEKIAELVK+KK+EGIS LRDESDKDGM
Sbjct: 241 IMRARAEVEIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 301 RIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREV 360
           RIVIE KR  VGEVVLNNLYA TQ+Q++FGINMVAL NGQPKLFNLKEML+ F+ HRREV
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQSSFGINMVALANGQPKLFNLKEMLEAFILHRREV 360

Query: 361 VTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVA 420
           VTRRT++ELRKAR+RAHILE LA+ALANID II LI+ +A+P++AK GLIA+GW+LG V 
Sbjct: 361 VTRRTVYELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTVK 420

Query: 421 AMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQL 480
           AMLE+AG DAARPEWLEP++GIRDG YF+TE QAQAILDLRLHKLTGLEHEKIL EY++L
Sbjct: 421 AMLEKAGDDAARPEWLEPEFGIRDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEEL 480

Query: 481 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVV 540
           LE IA L+HIL S ERLMEVI+EELE I   F D RRTEI A+  DI +E+LI  EDVVV
Sbjct: 481 LEIIAGLLHILRSPERLMEVIKEELELILEQFGDNRRTEINASAVDISLEDLINEEDVVV 540

Query: 541 TLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYR 600
           TLSH GY KYQ L+DY+AQRRGGKGK+ATK+K+ED++E+LLVANTHD IL FS  GK Y 
Sbjct: 541 TLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKLYW 600

Query: 601 MKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLD 660
           +KVYQLPLASR ARG+PIVNLLPL+E ERITAILPV E+ E K+I MAT  GTVKKT+L 
Sbjct: 601 LKVYQLPLASRQARGRPIVNLLPLQEGERITAILPVREYEEGKYILMATSHGTVKKTALT 660

Query: 661 QFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQP 720
           +++  R+NG+IA+NL+D D LIGVDITDG SEIMLFS  GKVVRFKE EE AVVDENG P
Sbjct: 661 EYSRPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVRFKEGEEVAVVDENGNP 720

Query: 721 VLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRT 780
           VLDE G+P+I FKGVRPMGR A GVRG+ L +G +VVSLIVPK +  +LTVT NG+GKRT
Sbjct: 721 VLDEEGKPQINFKGVRPMGRGATGVRGIALEEGQRVVSLIVPKDDSAILTVTANGFGKRT 780

Query: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG 840
            L+EYP K R T+GVVSIKV+ERNG VVGAVQV E DE M+I++ GTLVRT    VS +G
Sbjct: 781 ELAEYPAKSRATKGVVSIKVTERNGPVVGAVQVGENDEIMLISDKGTLVRTPAIGVSIIG 840

Query: 841 RNTQGVTLIRTSEGESVVGLQRIDEIEE------SELPEGEEALVENDAPVAQDDDGEQE 894
           RNTQGVT+IRT++ E+VVGLQRIDEI++       E  EG E  +  +A     DD   E
Sbjct: 841 RNTQGVTIIRTADDETVVGLQRIDEIQDDGSEYLEEGVEGAEGDIIAEADTQPTDDANDE 900