Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 743 a.a., Gram negative topoisomerase IV, subunit A (NCBI) from Rhodospirillum rubrum S1H

 Score =  421 bits (1081), Expect = e-121
 Identities = 253/638 (39%), Positives = 368/638 (57%), Gaps = 58/638 (9%)

Query: 7   EITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66
           EI    + + L   YL YA+S IV R+LPDVRDGLKPVHRR+L+AM +L  D    +KK 
Sbjct: 11  EIRETPLSEALSERYLAYALSTIVSRSLPDVRDGLKPVHRRLLYAMRMLKLDPGSGFKKC 70

Query: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126
           ARVVGDVIGKYHPHGD+AVY+ +VR+AQ F++RY LV+GQGNFG+IDGD+AAAMRYTE R
Sbjct: 71  ARVVGDVIGKYHPHGDAAVYEAMVRLAQEFAVRYPLVEGQGNFGNIDGDNAAAMRYTEAR 130

Query: 127 MSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHN 186
           ++ +A  L+  LD + VD+ P YDG +  P V+P   PNLL NG+SGIAVGMATNIPPHN
Sbjct: 131 LTAVASALMEGLDDDAVDFRPTYDGEDHEPVVMPAAFPNLLANGSSGIAVGMATNIPPHN 190

Query: 187 LGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGR-KGIIDAYKTGRGKVYMRSK 245
           +GE+ +  L  I   A   + L+ ++ GPDFPT  +++   + I +AY+TGRG + +R++
Sbjct: 191 VGELCEALLHLIKVPACPPEALLSFVKGPDFPTGGVLAEHPQAIAEAYRTGRGAMRLRAR 250

Query: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305
            E E   +G   I+++EIPYQ+ KA+L+E+IAEL+  +K+  ++ +RDES  D +R+V+E
Sbjct: 251 WEKENLSHGLYQIVITEIPYQIQKAKLVERIAELINGRKLPILADVRDES-ADDLRLVLE 309

Query: 306 CKRDAV-GEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFVDHRREVVTR 363
            +   V  E ++  L+  T L+  F +NM  LD +G PK+  LKE L  F+DHR  V+ R
Sbjct: 310 PRNRTVDAETLMEQLFRLTDLEIRFNLNMNVLDGDGVPKVLGLKEALVAFLDHRLVVLGR 369

Query: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423
           R+   L K   R  +L G  +A  N+DE+I +IR    P   K  L+A            
Sbjct: 370 RSRHRLGKIEHRLEVLAGTLIAYLNLDEVIRIIREEDEP---KPALMA------------ 414

Query: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483
                                  + L++ Q +AIL++RL  L  LE  +I  E+  L  E
Sbjct: 415 ----------------------AFGLSDVQTEAILNMRLRSLRRLEEMEIRREHDALSAE 452

Query: 484 IAALMHILASTERLMEVIREELEAIRAGFS-----DARRTEITAATHD--IDMEELIARE 536
            A L  +LA      +VI +++   R  F        RRTE+ +A     + +E L+ RE
Sbjct: 453 KAGLEALLADEGLCWKVIAKQIRETRKTFGGDTALGRRRTELGSAPTAVIVPIEALVERE 512

Query: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596
            + V LS  G+++        A +   +     K KE D +   L A T D +L+  + G
Sbjct: 513 PITVLLSERGWLR--------AVKGHQEPGEENKFKEGDALLLALHAQTTDKLLILDSTG 564

Query: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634
           + + +   +  LA     G+P+  +L L  +  I ++L
Sbjct: 565 RFFTLPADK--LARGRGFGEPVRLMLDLPNDADIVSLL 600