Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 943 a.a., DNA gyrase, subunit A (NCBI) from Rhodospirillum rubrum S1H

 Score =  853 bits (2203), Expect = 0.0
 Identities = 457/947 (48%), Positives = 617/947 (65%), Gaps = 95/947 (10%)

Query: 7   EITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66
           +I+PV+IEDE++ SYLDYAMSVIV RALPDVRDGLKPVHRR+L++M   G ++NK Y+KS
Sbjct: 12  DISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMKESGYEFNKPYRKS 71

Query: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126
           AR+VGDV+GKYHPHGD ++YD +VRM Q F++R  L+DGQGNFGS+DGD AAAMRYTE R
Sbjct: 72  ARIVGDVMGKYHPHGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSMDGDRAAAMRYTEAR 131

Query: 127 MSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHN 186
           M+K AH LL D+DKETVD+ PNYD T + P VLP + PNLL+NGA GIAVGMATNIPPHN
Sbjct: 132 MAKAAHSLLDDIDKETVDFQPNYDETTREPIVLPARFPNLLVNGAGGIAVGMATNIPPHN 191

Query: 187 LGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKA 246
           LGEVID C A IDN A+T +EL++ +PGPDFPT   I GR G+  A+ TGRG V MR + 
Sbjct: 192 LGEVIDACCAMIDNPAVTAEELLELVPGPDFPTGGTILGRSGVRAAHLTGRGSVIMRGRT 251

Query: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306
             E    G++ IIV+E+PYQVNKA ++EKIAELV+EKK+EGIS +RDESD+ G+R+VIE 
Sbjct: 252 HFEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIRDESDRRGVRVVIEV 311

Query: 307 KRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTI 366
           KRDA+ EVVLN L+  T LQT+FG+NM+AL+ G+P+L  L+ +++ F+  R EV+ RRTI
Sbjct: 312 KRDAMAEVVLNQLFRYTPLQTSFGVNMLALNGGKPELLALRPIIEAFITFREEVIRRRTI 371

Query: 367 FELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERA 426
           FEL KARERAH L GLA+A+AN+D +I+LIR A  P  A+EGL+AR W   +V  +++  
Sbjct: 372 FELGKARERAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMARDWPAMDVEPLIKLI 431

Query: 427 GTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAA 486
                     EP   + DG Y L+E QA+AILDLRLH+LTGLE +K+  E  ++ ++I  
Sbjct: 432 D---------EPGRMVIDGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEIGQQIEE 482

Query: 487 LMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEG 546
            +HIL S  RL E++R EL  ++  ++  RRT +     + D+E+LI RE++VVT+++ G
Sbjct: 483 YLHILRSRARLFEIMRAELVEMKEAYATPRRTTLEENEFEHDIEDLIQREEMVVTVTNTG 542

Query: 547 YVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQL 606
           Y+K   L+ Y AQRRGG+G++   M++ED++  + V NTH  +L FS+ G  Y+MKVY+L
Sbjct: 543 YIKRVPLTTYRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSDGMVYKMKVYRL 602

Query: 607 PLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQFA 663
           PL +  ARGK +VN++PL E ERIT ++P+ E     +   +  AT  G V++  L  F 
Sbjct: 603 PLGTPQARGKAMVNIMPLNEGERITTVMPLPEDEGAWDQLDVMFATETGNVRRNRLSDFT 662

Query: 664 NVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLD 723
           NV +NG IA+ L + D LIGV     E +++L +  GK +RF   +              
Sbjct: 663 NVMSNGKIAMKLDEGDHLIGVATCTDEQDVLLTTNLGKAIRFAVGDVRVFA--------- 713

Query: 724 ENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIV---------------------- 761
                          GRT+ GVRG++LA+ D+V  L +                      
Sbjct: 714 ---------------GRTSTGVRGIRLAEDDRVNRLSILGHVEASAETRAAYLKQASALR 758

Query: 762 ---PKTEGD--------------------------VLTVTENGYGKRTSLSEYPTKGRGT 792
               +TEG+                          +LTVT  G+GKRTS  EY   GRG 
Sbjct: 759 RASGETEGEDDSTLDAEPGVLSAEEFEDLRQREEFLLTVTSRGFGKRTSAYEYRVTGRGG 818

Query: 793 QGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTS 852
           QG+ +I++SERNG+VV A  +A  D+ MMIT+ G L+R  V +V   GR TQGVTL R S
Sbjct: 819 QGIANIEMSERNGTVVAAFPIANEDQVMMITDGGQLIRMPVNDVRIAGRKTQGVTLFRLS 878

Query: 853 -EGESVVGLQRIDEIE------ESELPEGEEALVENDAPVAQDDDGE 892
            +GE VV + R+ E+       E +    +E+L E DA   +D+ GE
Sbjct: 879 DDGEHVVSVARLPEMNGNGDDGEGDDETPDESLAE-DANGGRDESGE 924