Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 745 a.a., DNA topoisomerase IV subunit A from Rhodanobacter denitrificans MT42

 Score =  382 bits (981), Expect = e-110
 Identities = 249/709 (35%), Positives = 384/709 (54%), Gaps = 66/709 (9%)

Query: 11  VNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVV 70
           + +++    +YLDY+M V++ RALP V DGLKPV RR+++AM+ LG       KKSAR +
Sbjct: 10  IPLKEYAERAYLDYSMYVVLDRALPFVGDGLKPVQRRIIYAMSELGLAATAKPKKSARTI 69

Query: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMSK 129
           GDVIGK+HPHGDS+ Y+ +V MAQPFS RY LVDGQGNFGS D   S AAMRYTE ++S 
Sbjct: 70  GDVIGKFHPHGDSSCYEAMVLMAQPFSYRYPLVDGQGNFGSPDDPKSFAAMRYTESKLSP 129

Query: 130 IAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGE 189
           IA  LL +L + TVD+VPN+DGT   P+ LP ++P++L+NG+ GIAVGMAT+IPPHNL E
Sbjct: 130 IAEALLGELGQGTVDWVPNFDGTMDEPSWLPARVPHVLLNGSMGIAVGMATDIPPHNLRE 189

Query: 190 VIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSKAEI 248
           +   C+  +D+   ++ +L +++ GPD+PT A +I+ R  ++  Y+TG G V  R+  + 
Sbjct: 190 LATACIRLLDDPDASVADLCEHVRGPDYPTEAEIITPRADLLAMYQTGGGSVRARAVYQR 249

Query: 249 ETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECK 307
           E     +  I+++ +P+QV+ ++++E+IA  ++ KK+  I  LRDESD +  +R+VI  +
Sbjct: 250 E-----EGNIVITALPHQVSPSKILEQIAAQMRAKKLPMIEDLRDESDHENPIRLVIVPR 304

Query: 308 RDAV-GEVVLNNLYANTQLQTTF--GINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRR 364
            + V  +  + +L+A T ++ +F   +NM+ LD G+P++ +LK +L  ++  R   VTRR
Sbjct: 305 SNRVDADETMQHLFATTDMEKSFRVNLNMIGLD-GRPQVKDLKRILTEWLSFRTSTVTRR 363

Query: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424
               L K   R H+LEGL  A  N+DE+I ++R    P   K  L+AR            
Sbjct: 364 LEHRLAKVDRRLHLLEGLHTAYLNLDEVIRIVRSEDEP---KPVLMAR------------ 408

Query: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484
                                 + L+E+Q   IL+ RL +L  LE  KI  E  QL EE 
Sbjct: 409 ----------------------FRLSEEQTDYILETRLRQLARLEEMKINAERDQLEEER 446

Query: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVTL 542
           A +  +L S  +L  +I++EL A    F DAR + +      H +D   L+A E V V L
Sbjct: 447 ARINVLLKSPAKLKSLIKDELRADAEKFGDARCSPLVEREVAHALDESALVASEPVTVVL 506

Query: 543 SHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMK 602
           S +G+ +     D +A+        A   +E D +   + A T   +    + G+ Y   
Sbjct: 507 SQKGWARAAKGHDVDAE--------ALNYREGDGLLAAVKARTTQQVAFIDSTGRAYSTL 558

Query: 603 VYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQF 662
            + LP  S    G+P+             A++       D  + +AT  G    T  +  
Sbjct: 559 AHTLP--SARGNGEPLTGRFSPAAGASFDAVI---AGDNDTRLVLATDFGYGFVTRFESL 613

Query: 663 ANVRANGLIALNLRDEDSLIGVDIT--DGESEIMLFSKFGKVVRFKESE 709
                 G   ++L D   ++   I+       I++ S  G ++ F  +E
Sbjct: 614 TGRNKAGKQIISLSDGAKVLAPQISTDPARDRIVVVSSEGHLLMFSVAE 662



 Score = 30.8 bits (68), Expect = 3e-04
 Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 12/167 (7%)

Query: 704 RFKESEETAVVDENGQPVLDENG----QPEIKFKGVRPMGRTAAG----VRGMKLADGDQ 755
           +F ++  + +V+      LDE+     +P       +   R A G       +   +GD 
Sbjct: 473 KFGDARCSPLVEREVAHALDESALVASEPVTVVLSQKGWARAAKGHDVDAEALNYREGDG 532

Query: 756 VVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAE 815
           +++ +  +T   V  +   G    T     P+  RG    ++ + S   G+   AV   +
Sbjct: 533 LLAAVKARTTQQVAFIDSTGRAYSTLAHTLPS-ARGNGEPLTGRFSPAAGASFDAVIAGD 591

Query: 816 GD-EFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQ 861
            D   ++ T+ G    TR   ++  GRN  G  +I  S+G  V+  Q
Sbjct: 592 NDTRLVLATDFGYGFVTRFESLT--GRNKAGKQIISLSDGAKVLAPQ 636