Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., DNA gyrase subunit A from Rhodanobacter denitrificans MT42

 Score = 1117 bits (2888), Expect = 0.0
 Identities = 572/879 (65%), Positives = 698/879 (79%), Gaps = 30/879 (3%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M++LAKE+  VNIEDE+R SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMN LGN WN
Sbjct: 1   MAELAKEVIRVNIEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNVWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           K YKKSARVVGDVIGKYHPHGD +VYD IVRMAQPFSLRY+LVDGQGNFGS+DGDSAAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDQSVYDAIVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTEVRMS++ HELLAD+DKETVD+ PNYD +E  P VLPT++PNLL+NG++GIAVGMAT
Sbjct: 121 RYTEVRMSRLTHELLADIDKETVDFGPNYDESEHEPLVLPTRVPNLLVNGSAGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNL EVI   +A ID   ++IDELM YIPGPDFPT  +I+G  GII+AY+TGRG++
Sbjct: 181 NIPPHNLNEVIAATIALIDEPTLSIDELMHYIPGPDFPTHGIINGSSGIIEAYRTGRGRI 240

Query: 241 YMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGM 300
            +R+KAEIET+ NG+ETIIV E+PYQVNKARLIEKIAELVKEKK+EGIS LRDESDKDGM
Sbjct: 241 LVRAKAEIETESNGRETIIVHELPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGM 300

Query: 301 RIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREV 360
           R+VIE ++DA+G+VVLNNL+  TQLQ TFGINMVAL +GQPKL NLK++L+ F+ HRREV
Sbjct: 301 RVVIEIRKDAMGDVVLNNLFQQTQLQVTFGINMVALLDGQPKLLNLKDILEAFIRHRREV 360

Query: 361 VTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVA 420
           VTRRTIFELRKAR RAHILEGL +ALANIDE+IELI+ +++PAEA+E ++AR W+ G V 
Sbjct: 361 VTRRTIFELRKARARAHILEGLTVALANIDEMIELIKTSSSPAEARERMVARRWEAGLVR 420

Query: 421 AMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQL 480
           A+L   G DA+RPE ++P+ G++D  Y L+E QA  IL +RLH+LTGLE EK+ DEY+Q+
Sbjct: 421 ALLSATGADASRPEDMDPRDGLKDDGYQLSEAQALEILAMRLHRLTGLEQEKLSDEYRQI 480

Query: 481 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVV 540
           LE I  L+ IL +  RL+EVIREELEA++A F DARRTEI  +  D+++ +LIA ED+VV
Sbjct: 481 LETIRGLIEILENPNRLLEVIREELEAVKAEFGDARRTEIQHSQEDLNVLDLIAPEDMVV 540

Query: 541 TLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYR 600
           TLSH GYVK Q  S Y AQRRGGKG+SA+ +K+ED +E+L V NTHD +L F++ G+ Y 
Sbjct: 541 TLSHTGYVKRQPASTYRAQRRGGKGRSASALKDEDVVEQLWVVNTHDTLLTFTSTGRVYW 600

Query: 601 MKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLD 660
           +KVYQ+P A   ARGKPI+NLLPL E E++ A+LPV E+S+D+++F AT  GTVKKT L 
Sbjct: 601 LKVYQIPEAGPGARGKPIINLLPLGEGEKVQAVLPVREYSDDRYVFFATRHGTVKKTPLT 660

Query: 661 QFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQP 720
           +FA     G  A+ L + D+L+ V++TDG S+I+LF+  GKV RF         DEN   
Sbjct: 661 EFAYQLQKGKQAIKLDEGDALVNVELTDGNSDILLFASNGKVNRF---------DEN--- 708

Query: 721 VLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRT 780
                         VR MGRTA GVRGMKL  G +VVSLIV   EGD+LT T  GYGKRT
Sbjct: 709 -------------TVRSMGRTATGVRGMKLVGGAEVVSLIV-AAEGDILTATARGYGKRT 754

Query: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG 840
            L+E+  KGRGTQGV+ I+ SERNG++V AVQV E  E M+I+N GTLVRTRVAEVSQ+G
Sbjct: 755 ELAEFAKKGRGTQGVIGIQCSERNGALVAAVQVTEAHELMLISNQGTLVRTRVAEVSQLG 814

Query: 841 RNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGEEALV 879
           RNTQGVTLIR    E++V + R+D  E++    GE+A V
Sbjct: 815 RNTQGVTLIRLPADETLVSVMRLDAEEDN----GEDAEV 849