Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 757 a.a., DNA topoisomerase IV subunit A from Rahnella sp. WP5

 Score =  394 bits (1012), Expect = e-113
 Identities = 248/642 (38%), Positives = 371/642 (57%), Gaps = 64/642 (9%)

Query: 19  SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYH 78
           ++YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG   N  +KKSAR VGDV+GKYH
Sbjct: 20  NAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSNNAKFKKSARTVGDVLGKYH 79

Query: 79  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEVRMSKIAHELLAD 137
           PHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+SK A  LL +
Sbjct: 80  PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLRE 139

Query: 138 LDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAY 197
           L + TVDYVPN+DGT Q P +LP ++PN+L+NG +GIAVGMAT+IPPHN+ EV    +A 
Sbjct: 140 LGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNIREVAAAAVAL 199

Query: 198 IDNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKE 256
           ++    ++++L++++ GPDFPT A +I+ R  I   Y++G+G V MR+    E       
Sbjct: 200 LEKPNSSLEDLLEFVQGPDFPTEAEIITPRNEIRKMYESGKGSVRMRAVWHKEDG----- 254

Query: 257 TIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKRDAVG-EV 314
           + +++ +P+QV+ A+++E+IA  ++ KK+  +  LRDESD +   R+V+  + + +  + 
Sbjct: 255 SAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRLVVVPRSNRIDLDQ 314

Query: 315 VLNNLYANTQLQTTFGI--NMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKA 372
           V+N+L+A T L+ ++ I  NM+ LD+ +P++  L E+L  ++ +RR+ V RR  F L K 
Sbjct: 315 VMNHLFATTDLERSYRINMNMIGLDH-RPQVKGLLEILTEWLAYRRDTVRRRLNFRLDKV 373

Query: 373 RERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAAR 432
            +R HILEGL  A  NIDE+I +IR   T  E K  L+ R                    
Sbjct: 374 LKRLHILEGLLTAFLNIDEVIHIIR---TEDEPKPVLMQR-------------------- 410

Query: 433 PEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILA 492
                         + L++ QA+AIL+L+L  L  LE  KI  E  +L +E   L  +LA
Sbjct: 411 --------------FELSDTQAEAILELKLRHLAKLEETKIRGEQDELAKERDQLQALLA 456

Query: 493 STERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEE--LIAREDVVVTLSHEGYVKY 550
           S  +L  +IR+E++A    F D RR+ IT       M E   I  E V + LS  G+V+ 
Sbjct: 457 SERKLSTLIRKEIQADAEAFGDERRSPITEREEARAMSEHDFIPSEPVTIVLSESGWVRS 516

Query: 551 QLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLAS 610
               D +A        S    K  D         ++  ++   + G++Y +    LP  S
Sbjct: 517 AKGHDIDA--------SGLSYKAGDSFRAAAKGKSNQPVVFMDSTGRSYALDPTTLP--S 566

Query: 611 RTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDG 652
              +G+P+   L       I  +L     ++D+ + MA+  G
Sbjct: 567 ARGQGEPLTGKLTPPPGATIEHVLMA---ADDQKLLMASDAG 605