Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 753 a.a., DNA topoisomerase IV subunit A from Rhodopseudomonas palustris CGA009

 Score =  402 bits (1034), Expect = e-116
 Identities = 261/712 (36%), Positives = 391/712 (54%), Gaps = 65/712 (9%)

Query: 7   EITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66
           EI  V + + L   YL YA+S I+ RALPD RDGLKPVHRR+L+ M +L  D    +KKS
Sbjct: 12  EIHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKS 71

Query: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126
           A++VGDV+G +HPHGD ++YD +VR+AQ FS RY LVDGQGNFG+IDGD+ AA RYTE R
Sbjct: 72  AKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131

Query: 127 MSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHN 186
           M+ +A  LL  +D++ V +  NYDG  + P VLP   PNLL NGA GIAVGMAT IPPHN
Sbjct: 132 MTDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHN 191

Query: 187 LGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSK 245
             E+ D  L  I+        L+ ++ GPDFPT   +I  ++ I +AY TGRG    R+K
Sbjct: 192 AAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAK 251

Query: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305
            E E    G  T++V++IP+ V K+RLIEKIAEL+ EKK+  +  +RDES +D +RIVIE
Sbjct: 252 WEQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAED-VRIVIE 310

Query: 306 CKRDAVG-EVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363
            K  +V   +++ +L+  T+L++   +N+  L  G+ PK+  L E L+ ++DH R+V+ R
Sbjct: 311 PKSRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLR 370

Query: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423
           R+ +   +   R  +L G  +A  NID++I++IR   T  E K  L+             
Sbjct: 371 RSEYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIR---TEDEPKPVLMK------------ 415

Query: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483
                                  + LTE QA+AIL++RL  L  LE  +I  E K L  E
Sbjct: 416 ----------------------AFNLTEIQAEAILNMRLRSLRKLEEFEIRTEDKNLRAE 453

Query: 484 IAALMHILASTERLMEVIREELEAIRAGFS-----DARRTEIT-AATHDIDM--EELIAR 535
           +  +  +L S       + E++  +R  F        RRT+   A  HD+    E  + R
Sbjct: 454 LKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIEEAFVER 513

Query: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595
           E V V +S +G+V+          +   +  S    K++D + +   A T   +LL +T 
Sbjct: 514 EPVTVVISDKGWVR--------TLKGHVEDLSGLNFKQDDKLGQSFFAETTSKLLLLATN 565

Query: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655
           G+ Y + V +LP       G+PI   + +E++    AI+ V   +  +   +A+ DG   
Sbjct: 566 GRFYALDVAKLP--GGRGHGEPIRMFIDMEQD---AAIVTVFVHTGGRKFLIASHDGQGF 620

Query: 656 KTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRF 705
             + D+       G  ++ +++ +E   + V +++G+  I +     K+V F
Sbjct: 621 VVNEDECVGSTRKGKQILNVDVPNEARALTV-VSEGDDSIAVIGDNRKMVIF 671