Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 913 a.a., DNA gyrase subunit A from Rhodopseudomonas palustris CGA009

 Score =  855 bits (2208), Expect = 0.0
 Identities = 462/930 (49%), Positives = 613/930 (65%), Gaps = 96/930 (10%)

Query: 7   EITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66
           +I PV+I DE++ SYLDYAMSVIV RALPD RDGLKPVHRR+L+ M   G +WNK Y+KS
Sbjct: 17  DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKS 76

Query: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126
           AR VGDVIGKYHPHGD +VYD +VRMAQ FS+R  L+DGQGNFGS+DGD  AAMRYTE R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 136

Query: 127 MSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHN 186
           ++KIA  LL D+DK+TVD+ PNYD +E+ P VLP K PNLL+NGA GIAVGMATNIPPHN
Sbjct: 137 LTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 187 LGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKA 246
           LGEVID C+A ID+ A++ID+L   +PGPDFPT  +I GR GI  AY+TGRG + MR K 
Sbjct: 197 LGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIRAAYQTGRGSIVMRGKV 256

Query: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306
           EIET +  +E IIVSEIPYQVNKA ++E+IAELV+EKK+EGI  LRDESD+DG R+VIE 
Sbjct: 257 EIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIEL 316

Query: 307 KRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTI 366
           +RDAV EVVLN LY  T LQT FG NMVAL+ G+P+L NLK++L  FV  R +VVTRRT 
Sbjct: 317 RRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLTVFVAFREQVVTRRTK 376

Query: 367 FELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERA 426
           F L KAR+RAHIL GLA+A+ANIDEII +IR +  P  A+E L++R W   +VAAM+   
Sbjct: 377 FLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLI 436

Query: 427 GTDAARPEWLEPQYGIR-DGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485
                     +P++ +  DG   L+ +QA+AILDLRL +LT L  E+I +E  +L  EIA
Sbjct: 437 D---------DPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIA 487

Query: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545
             + IL S  R+  +++ EL  ++A F+  RRT I     +++ E+LI RED+VVT+SH 
Sbjct: 488 DYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDMVVTVSHA 547

Query: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605
           GYVK   LS Y AQRRGGKG+S    +EED++ RL VA+TH  +L FS+RG+ Y+ KV++
Sbjct: 548 GYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWR 607

Query: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE----FSEDKFIFMATGDGTVKKTSLDQ 661
           LPLA    RGK ++N+LPLE+ ERIT I+P+ E    +SE   +F  TG G V++  L  
Sbjct: 608 LPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTG-GNVRRNKLSD 666

Query: 662 FANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPV 721
           F +VR +G+IA+ L + ++++ V I     +++L +  G+ +RF              PV
Sbjct: 667 FVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRF--------------PV 712

Query: 722 LDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIV-------------------- 761
                 P+++       GRT+ GVRG+ L+ GD V+SL +                    
Sbjct: 713 ------PDVRVFS----GRTSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGA 762

Query: 762 ---------------PKTEGD----------------------VLTVTENGYGKRTSLSE 784
                          P+ E +                      VLT++ENGYGKRTS  E
Sbjct: 763 IRRAATGEENEPVETPEAEAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFE 822

Query: 785 YPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQ 844
           Y T GRG +G+V++ V+ RNG +V +  V + D+ M++T+ G L+R  V  +   GR+TQ
Sbjct: 823 YRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQ 882

Query: 845 GVTLIRTSEGESVVGLQRIDEIEESELPEG 874
           GV +  T++ E VV ++RI E ++ E   G
Sbjct: 883 GVIVFNTADDEKVVSVERIPETDDGENGNG 912