Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 908 a.a., DNA gyrase subunit GyrA from Phaeobacter inhibens DSM 17395

 Score =  746 bits (1926), Expect = 0.0
 Identities = 405/898 (45%), Positives = 576/898 (64%), Gaps = 47/898 (5%)

Query: 11  VNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVV 70
           V+IE E+R+SYLDYAMSVIV RA+PD+RDGLKPVHRR+L+AM+ +GN  +K Y+KSAR V
Sbjct: 16  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARPV 75

Query: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKI 130
           GDV+GKYHPHGDSA+YD +VRMAQ FS+   L+DGQGNFGS+DGD+ AAMRYTEVRM K 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 131 AHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEV 190
           A  +LAD++K+TVD+  NYDG ++ P VLP + PN+L+NGA GIAVGMATNIPPHNLGEV
Sbjct: 136 AASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 191 IDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKAEIET 250
           ID  LA I++  +T ++L+DY+PGPDFPT  ++ GR G   AY  GRG V +R+K  +E 
Sbjct: 196 IDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVVIRAKTRVEE 255

Query: 251 DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECKRDA 310
            +  +  I+V EIPYQVNKA +IEKIAE V+EKK+EG+S ++DESD++G+R+V+E KRDA
Sbjct: 256 IRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELKRDA 315

Query: 311 VGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELR 370
             EVVLN LY  + +QT FG NM+AL+ G+P+   L+  L  F+D R +V+ RRT ++LR
Sbjct: 316 TAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTSFLDFREDVIARRTAYDLR 375

Query: 371 KARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDA 430
           KARER+HIL GLA+A++N+DE++  IR +A  AEA+  L+ R W   ++A  +       
Sbjct: 376 KARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLID--- 432

Query: 431 ARPEWLEPQYGIR-DGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMH 489
                 +P + +  DG Y L+E QA+AIL+LRL +LT +  +++ DE ++L  +I   + 
Sbjct: 433 ------DPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLE 486

Query: 490 ILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEGYVK 549
           IL+S ER++ +I +EL  +R  F+  RRTEI   + D++ E+LI RED+VVT++  GY+K
Sbjct: 487 ILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIK 546

Query: 550 YQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLA 609
              L D+ AQ+RGGKG S  + KEED +  L VANTH  +L F+T G  Y++K ++LP  
Sbjct: 547 RTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQG 606

Query: 610 SRTARGKPIVNLLPLEENERITAILPVTEFSEDKF----IFMATGDGTVKKTSLDQFANV 665
            RT++GK IVN+LP+     I AI+PV +  +D++    +  AT  G V++  L  F NV
Sbjct: 607 GRTSKGKAIVNILPIPPGVSIAAIMPV-DVPDDEWENLQVVFATSGGDVRRNRLSDFTNV 665

Query: 666 RANGLIALNLRDEDS--LIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPV-- 721
           R NG IA+ L ++ S  L+   I   + ++ML +  G+ +RF+ ++           V  
Sbjct: 666 RRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNSRESTGVRG 725

Query: 722 --LDENGQPEIKFKGVR-----PMGRTAAGVRGMKLADGDQVVSLIVPKTEGD------- 767
             L   G   +    +R     P  R A   R      G+        ++EG        
Sbjct: 726 IRLVSEGDEVVSMSVIRHFSAEPWERNAFIKRFRSELGGEVAEDENGEESEGSLSEERYQ 785

Query: 768 --------VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF 819
                   ++T+  +G G  TS  +Y   GRG QGV ++K     G++V    V   D+ 
Sbjct: 786 EMLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMK----GGAIVATFPVELEDQI 841

Query: 820 MMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRIDE--IEESELPEGE 875
           M+ T+ G  +R  V  +S   R+  GV +  T++GE VV +  I E   E++E+P  E
Sbjct: 842 MLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAERDDEDAEVPTSE 899