Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 782 a.a., DNA topoisomerase 4 subunit A from Phaeobacter inhibens DSM 17395

 Score =  443 bits (1140), Expect = e-128
 Identities = 287/746 (38%), Positives = 415/746 (55%), Gaps = 61/746 (8%)

Query: 21  YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 80
           YL YA+S I+ RALPD RDGLKPVHRR+L+AM+ L       + KSA++ GD +G +HPH
Sbjct: 31  YLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLTSTGGFLKSAKISGDTMGDFHPH 90

Query: 81  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDK 140
           GD+A+YD + R+AQ F++RY LVDGQGNFG+IDGD+ AA RYTE RM+ +A  +L  L +
Sbjct: 91  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVAEAMLEGLSE 150

Query: 141 ETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYIDN 200
             VD+  NYDG    PAVLP   PN+L NGA+GIAVGMATNIPPHN+GE+ID CL  I  
Sbjct: 151 NAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIGELIDACLHLIKT 210

Query: 201 EAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKETII 259
                D L++Y+PGPDFPT  +I   ++ I  AY TGRG   +R   E+E    G+  I+
Sbjct: 211 PDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYNTGRGSFRLRCTHEVEDLGRGQWQIV 270

Query: 260 VSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECKRDAVG-EVVLNN 318
           ++EIPYQV K++LIEKIAEL++ KK+  ++ +RDES +D +RIV+E K   V  EV++N 
Sbjct: 271 ITEIPYQVQKSKLIEKIAELIQTKKIPILADVRDESAED-IRIVLEPKSKNVDPEVLMNM 329

Query: 319 LYANTQLQTTFGINM-VALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKARERAH 377
           ++ N+ L+  F +NM V +D   PK+ ++KE+L+ F+DHRR+V+ RR+   + K   R  
Sbjct: 330 MFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSQHRMDKIDHRLE 389

Query: 378 ILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARPEWLE 437
           +LEG  +A  N+D +I++IR    P   K  L+   W L +      RA T+A   +++ 
Sbjct: 390 VLEGFIIAFLNLDRVIDIIRYDDDP---KAALMRENWSLDH-----PRAYTEA---DYVS 438

Query: 438 PQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERL 497
           P  G  +    LTE QA+AIL++RL  L  LE  +++ E   L EE A L+ +LAS +  
Sbjct: 439 PAIGAGE----LTEVQAEAILNMRLRSLRRLEEIELVRERDALREERAGLVELLASEDLQ 494

Query: 498 MEVIREELEAIRAGFSDA-----RRTEITAA--THDIDMEELIAREDVVVTLSHEGYVKY 550
              I E+L+  +  F        RRT    A    ++ +E +I RE + V  S  G+++ 
Sbjct: 495 WSRIAEQLKDTKKQFGKTYEGGPRRTRFAEAGEVEEVPLEAMIDREPITVVCSQMGWIR- 553

Query: 551 QLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLAS 610
            +    +  R         K K+ D    +  A T D +L+F++ G+ Y +    LP   
Sbjct: 554 AMTGHIDLGRE-------LKFKDGDGPRFIFHAETTDRLLVFASNGRFYTISASNLP--G 604

Query: 611 RTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGL 670
               G+P+  ++ L     I  IL      E + +  +           D  A  R +G 
Sbjct: 605 GRGMGEPLRLMVDLPNEVEIVDIL--IHNPEGRLLVASDAGNGFICAEKDIVAQTR-SGK 661

Query: 671 IALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQ-PVLDENGQPE 729
             LN++D+D                     K+      +  AVV ENG+  V      PE
Sbjct: 662 QVLNVKDDDR-------------------AKICIRVTGDHVAVVSENGKFLVFAVEEMPE 702

Query: 730 I-KFKGVR-PMGRTAAGVRGMKLADG 753
           + + KGVR      A G +G    DG
Sbjct: 703 LTRGKGVRLQKYNMARGKQGSLELDG 728