Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 965 a.a., DNA topoisomerase IV from Pedobacter sp. GW460-11-11-14-LB5

 Score =  178 bits (452), Expect = 1e-48
 Identities = 121/373 (32%), Positives = 203/373 (54%), Gaps = 38/373 (10%)

Query: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67
           ITP+N   E  + +LDYA  VI+ RA+P + DGLKPV RR++ ++  + +     + K+A
Sbjct: 17  ITPINGLYE--NWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEMDDG---RFNKAA 71

Query: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS-IDGDSAAAMRYTEVR 126
            V+G+ + KYHPHGD+++ D +V++ Q    + +L+D QGN+G  + GDSAAA RY E R
Sbjct: 72  NVIGNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDMQGNWGDPVTGDSAAAPRYIEAR 126

Query: 127 MSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHN 186
           +SK A++++ + D  T ++  +YDG    P  LP K P LL  GA GIAVG+AT + PHN
Sbjct: 127 LSKFANDVVFNPD--TTEWQLSYDGRNNEPITLPVKFPLLLAQGAEGIAVGLATKVMPHN 184

Query: 187 LGEVIDGCLAYIDNEAITIDELMDYIPG--PDFPTAALISGRKGIIDAYKTGR--GKVYM 242
             E++D           +ID L    P   PDF T  +          Y  G+  GK+ +
Sbjct: 185 FIELLDA----------SIDALRGVRPNILPDFFTGGMAD-----FSNYNEGQRGGKIRV 229

Query: 243 RSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRI 302
           R+K    T+K+ K+T+++SE+P+      +I+ I     + K++ I  + D +  + + I
Sbjct: 230 RAKI---TEKD-KKTLVISEVPFSTTTGSVIDSILSANDKGKIK-IKKIEDNTAAN-VEI 283

Query: 303 VIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVT 362
           V+        +V ++ LYA T  + +   N   +   +P   ++ ++L     H + ++ 
Sbjct: 284 VVHLAPGISPDVTIDALYAFTACEVSISPNTCIIQGDKPLFLSVNDILIENTKHTKNLLK 343

Query: 363 RRTIFELRKARER 375
           R     L + +E+
Sbjct: 344 RELEIRLHELQEK 356