Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., DNA gyrase, A subunit (RefSeq) from Shewanella loihica PV-4

 Score = 1283 bits (3319), Expect = 0.0
 Identities = 654/899 (72%), Positives = 751/899 (83%), Gaps = 35/899 (3%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M+DLA  ITP+NIEDEL++SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMN L NDWN
Sbjct: 1   MTDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           K YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFS+RY LVDGQGNFGS+DGD+AAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTE+RM K+AH+LLADL+KETVDYVPNYDGTEQIPAVLPT+IP LL+NG+SGIAVGMAT
Sbjct: 121 RYTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNL EVI GCLA ID  +++I++LM++IPGPDFPTAA+++GRKGI DAYKTGRGK 
Sbjct: 181 NIPPHNLSEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAAIVNGRKGIEDAYKTGRGKA 240

Query: 241 YMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGM 300
            MR++A +ET+ NG+E IIV+EIPYQVNKARLIEKIAELVK+KK+EGIS LRDESDKDGM
Sbjct: 241 VMRARATVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 301 RIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREV 360
           RIVIE KR  VGEV+LNNLYA TQLQT+FGINMVAL NGQPKLFNLKEML+CF+ HRREV
Sbjct: 301 RIVIEVKRGEVGEVILNNLYAQTQLQTSFGINMVALTNGQPKLFNLKEMLECFILHRREV 360

Query: 361 VTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVA 420
           VTRRT+FELRKARERAHILE LA+ALANID II LI+ + TPAEAK  L+++GW LGNV 
Sbjct: 361 VTRRTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNVQ 420

Query: 421 AMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQL 480
            MLE+AG DAARPEWL  ++GIRDG Y+LTEQQAQAILDLRLHKLTGLEHEKIL EY++L
Sbjct: 421 GMLEKAGDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEEL 480

Query: 481 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVV 540
           LE IAAL++IL S ERLMEVI+EEL+ +   F D RRTE+ A+  DI +E+LI  EDVVV
Sbjct: 481 LELIAALLYILRSPERLMEVIKEELQEVLEVFGDERRTELNASAVDISLEDLINEEDVVV 540

Query: 541 TLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYR 600
           TLSH GY KYQ LSDY+AQRRGGKGK+ATK+K+ED++E+LLVANTHD IL FS  GK Y 
Sbjct: 541 TLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYW 600

Query: 601 MKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLD 660
           +KVYQLPLASR ARG+PI+NLLPL E ERITAILPV E+  DK++ MAT  GTVKKTSLD
Sbjct: 601 LKVYQLPLASRQARGRPIINLLPLAEGERITAILPVREYDADKYVIMATSHGTVKKTSLD 660

Query: 661 QFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQP 720
           Q++  RANG+IA+NL+D D LIGVDIT+G++E+MLFS  GKVVRF E +           
Sbjct: 661 QYSRPRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQ----------- 709

Query: 721 VLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRT 780
                         VR MGRTA GVRG+KL DG  VVSLIVPK +G +LTVTENGYGKRT
Sbjct: 710 --------------VRGMGRTATGVRGIKLEDGQSVVSLIVPKNDGAILTVTENGYGKRT 755

Query: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG 840
            L EYP K R T+GVVSIKVSERNG+VVGAVQV E DE M+I++ GTLVRT  + VS +G
Sbjct: 756 ELDEYPAKSRATKGVVSIKVSERNGAVVGAVQVLENDEIMLISDKGTLVRTPASGVSTIG 815

Query: 841 RNTQGVTLIRTSEGESVVGLQRIDEI-EESELPEG---------EEALVENDAPVAQDD 889
           RNTQGVT+IRT+  E+VVGLQRIDEI +E E  E          EE  VE +AP A+ D
Sbjct: 816 RNTQGVTIIRTATDETVVGLQRIDEIQDEQEFDEEGNPIITDTVEEQQVEGEAPEAEPD 874