Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 755 a.a., DNA topoisomerase IV subunit A (RefSeq) from Shewanella loihica PV-4

 Score =  383 bits (984), Expect = e-110
 Identities = 241/640 (37%), Positives = 366/640 (57%), Gaps = 65/640 (10%)

Query: 20  SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79
           +YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG      +KKSAR VGDV+GKYHP
Sbjct: 24  AYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSAQSKHKKSARTVGDVLGKYHP 83

Query: 80  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMSKIAHELLADL 138
           HGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+SK +  LL +L
Sbjct: 84  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEARLSKFSEVLLTEL 143

Query: 139 DKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYI 198
            + TVD+  N+DGT + P VLP ++P++L+NG +GIAVGMAT++PPHN  E++D C+  I
Sbjct: 144 GQGTVDWGVNFDGTLKEPMVLPARLPHILLNGITGIAVGMATDVPPHNARELVDACVELI 203

Query: 199 DNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKET 257
           DN  + ++ LM+ +PGPD+PT A +IS R  I   Y+TGRG +  R+   +E+ +     
Sbjct: 204 DNPKVDLERLMELVPGPDYPTEAEIISPRTEIAKIYETGRGSIKARAVYSVESGE----- 258

Query: 258 IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKRDAVG-EVV 315
           I+++ +P+Q +  +++E+IA  ++ KK+  ++ LRDESD +  +RIVI  + + V  + +
Sbjct: 259 IVITALPHQASGGKILEQIAAQMQAKKLPMVADLRDESDHESPVRIVIVPRSNRVDCDQL 318

Query: 316 LNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKARE 374
           + +L+A T L+  F +N+  L  NG+P++  LK++L  +++ R   V RR    L K   
Sbjct: 319 MAHLFATTDLEKNFRVNLNVLGLNGRPQVKGLKQLLTEWLEFRLTTVRRRLEHRLDKVLA 378

Query: 375 RAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARPE 434
           R HILE L +A  NIDE+IE+IR    P   K  L++R                      
Sbjct: 379 RLHILEALMIAFLNIDEVIEIIRYHDDP---KAELMSR---------------------- 413

Query: 435 WLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILAST 494
                       + LT++QA AILDL+L  L  LE  KI  E  +L  E   L  +L+S 
Sbjct: 414 ------------FNLTDEQANAILDLKLRHLAKLEEFKIKTEQSELEAEREKLELLLSSD 461

Query: 495 ERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVTLSHEGYVKYQL 552
            R+  +I++EL+     + D RR+ +   + +  +  +EL+  E V V LS +G+V+   
Sbjct: 462 RRMKTLIKKELKQDAETYGDERRSPLVERSESRALSEQELVPAEAVTVVLSEKGWVRCAK 521

Query: 553 LSDYEAQRRGGKGKSATKMKEED-YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR 611
             D +         +A   K  D ++      + H  + + ST G+ +    + LP  S 
Sbjct: 522 GHDID--------PTALSYKAGDGFLCAASGRSNHATVFIGST-GRAFATDTHTLP--SA 570

Query: 612 TARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGD 651
            ++G+P+     L   E +   L      ED   F+   D
Sbjct: 571 RSQGEPVTTRFQLSPGESMAHAL----LGEDGQCFLLASD 606