Pairwise Alignments
Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056
Subject, 847 a.a., DNA topoisomerase IV, A subunit, proteobacterial from Dechlorosoma suillum PS
Score = 407 bits (1045), Expect = e-117
Identities = 279/791 (35%), Positives = 415/791 (52%), Gaps = 102/791 (12%)
Query: 20 SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79
+YL+YA+SV+ GRALPDV DG KPV RR+L+AMN LG KSARVVGDVIGKYHP
Sbjct: 102 AYLEYAVSVVKGRALPDVCDGQKPVQRRILYAMNELGLTSGAKPVKSARVVGDVIGKYHP 161
Query: 80 HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLD 139
HGDS+VY+ IVR+AQ FSLRY LVDG GNFGS DGD+AAAMRYTE R++ IA LL +LD
Sbjct: 162 HGDSSVYEAIVRVAQDFSLRYPLVDGIGNFGSRDGDTAAAMRYTECRLTPIAQLLLGELD 221
Query: 140 KETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYID 199
TVD+ PNYDG Q PA+LP ++P LL+NGASGIAVGMAT +P HNL EV + +A I
Sbjct: 222 MGTVDFQPNYDGAFQEPALLPARLPMLLLNGASGIAVGMATEMPSHNLREVSEAAIALIR 281
Query: 200 NEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKETI 258
+++ +LM+YIP PDFP +IS I +AY+TGRG + +R++ ++E G+ +
Sbjct: 282 KPELSVADLMEYIPAPDFPGGGQIISTPADIRNAYETGRGSLKVRARWKVEELARGQWQL 341
Query: 259 IVSEIPYQVNKARLIEKIAELVKEKKVEGISAL------------------RDESDKD-G 299
+V E+P + +++E+I +L K G L RDESDK
Sbjct: 342 VVYELPPSASNQKILEEIEDLTNPKVKTGKKTLTQEQTQTKQLILSVLEKARDESDKQHP 401
Query: 300 MRIVIE---CKRDAVGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFVD 355
+R+V E ++DA +N L A+T ++++ INMVA+ +G+P+ LK++L ++
Sbjct: 402 VRLVFEPRSSRQDA--NEFMNILLAHTSMESSAPINMVAIGLDGRPRQKTLKDLLAEWIA 459
Query: 356 HRREVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWD 415
R + V RRT L K +R HILEG + NIDE+I LIR + P K LIAR
Sbjct: 460 FRFDTVRRRTEHRLGKVNDRIHILEGRHIVFLNIDEVIHLIRESDEP---KAALIAR--- 513
Query: 416 LGNVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILD 475
+ L+++QA+ IL++RL +L LE KI
Sbjct: 514 -------------------------------FNLSDRQAEDILEIRLRQLARLEGIKIEQ 542
Query: 476 EYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAR 535
E +L EE A L ++LA + + +I E++A + D RRT + AA + +++
Sbjct: 543 ELAELREEKAGLENLLADDKAMKSLIISEIKADTKKYGDERRTVVEAAER-AAVAQVVVN 601
Query: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595
E V V LS +G+++ ++ G S KE D + T DN+++ T
Sbjct: 602 EPVTVLLSEKGWMR--------TRQGHGLDLSTVGFKEGDRLFAAQECRTVDNVVVLLTD 653
Query: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655
G+ + V LP G P+ L+ + ++ ++ + ++ + +A G
Sbjct: 654 GRACTVPVSSLP--GGRGDGVPVATLITIPSGAKVAQMVC---GNAEQRVLLAVSSGYGF 708
Query: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715
+ G +++ D+++ D ++ S G+++ F
Sbjct: 709 TCRIGDMLGRNKAGKQFISVEPGDTILSPWTFDSHETLLAISSGGRLLVF---------- 758
Query: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENG 775
P+ D N P R GV MKL +GD + ++ V ++ + +
Sbjct: 759 ----PIADVNELP-----------RGGRGVILMKLNEGDTLAAVAVAASDETLQIRCISK 803
Query: 776 YGKRTSLSEYP 786
GK T +S P
Sbjct: 804 TGKETQMSVTP 814
Score = 38.1 bits (87), Expect = 2e-06
Identities = 21/111 (18%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 750 LADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVG 809
+ G +V ++ E VL +GYG + + + + + +S+ E +++
Sbjct: 680 IPSGAKVAQMVCGNAEQRVLLAVSSGYGFTCRIGDMLGRNKAGKQFISV---EPGDTILS 736
Query: 810 AVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGL 860
+ + I++ G L+ +A+V+++ R +GV L++ +EG+++ +
Sbjct: 737 PWTFDSHETLLAISSGGRLLVFPIADVNELPRGGRGVILMKLNEGDTLAAV 787
Score = 35.4 bits (80), Expect = 1e-05
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 23/144 (15%)
Query: 738 MGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVS 797
+GR AG + + + GD ++S + +L ++ G +++ RG +GV+
Sbjct: 716 LGRNKAGKQFISVEPGDTILSPWTFDSHETLLAISSGGRLLVFPIADVNELPRGGRGVIL 775
Query: 798 IKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQ-GVT--------L 848
+K++E G + AV VA DE + I +S+ G+ TQ VT
Sbjct: 776 MKLNE--GDTLAAVAVAASDETLQIRC-----------ISKTGKETQMSVTPKDVQIFLS 822
Query: 849 IRTSEGESVVG-LQRIDEIEESEL 871
R +GE+ +G Q + + E+ L
Sbjct: 823 ARARKGEAFIGRTQPVGFVRETPL 846