Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 873 a.a., DNA gyrase, A subunit from Dechlorosoma suillum PS

 Score = 1060 bits (2742), Expect = 0.0
 Identities = 540/896 (60%), Positives = 670/896 (74%), Gaps = 27/896 (3%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M   AKE  P+++E+E+R SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM+ LGNDWN
Sbjct: 1   MDQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGNDWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           KAYKKSAR+VGDVIGKYHPHGD+AVYDTIVRMAQ FSLRYMLVDGQGNFGS+DGD+AAAM
Sbjct: 61  KAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTEVRM++I H+LL D+DKETVD+ PNYDG+EQ P +LP +IPNLLING+SGIAVGMAT
Sbjct: 121 RYTEVRMARIGHQLLEDIDKETVDFGPNYDGSEQEPLILPARIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNLGEV+  CLA + N  +TIDEL+D IP PDFPTA +I G  G+ + Y+TGRG+V
Sbjct: 181 NIPPHNLGEVVAACLALLQNPNLTIDELIDIIPAPDFPTAGIIYGVAGVREGYRTGRGRV 240

Query: 241 YMRSKAEIET-DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
            MR+K  +E  DK  ++ +I+ E+PYQVNK  L+EKI ELV EK++EGIS LRDESDK G
Sbjct: 241 VMRAKTHVEDLDKGNRQALIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSG 300

Query: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
           MR+VIE KR  + EVVLNNL+  TQLQ TFG+NMVAL +GQP+L NLK+ML+CF+ HRRE
Sbjct: 301 MRVVIELKRGEMPEVVLNNLFKMTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLAHRRE 360

Query: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
           V+ RRT+FELRKARE+AH  EGLA+AL N+DEII LI+ A TPA+A+  L+AR W    V
Sbjct: 361 VLNRRTVFELRKAREKAHTQEGLAVALDNVDEIIALIKAAPTPADARRELMARMWVSATV 420

Query: 420 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 479
             ML RA  DA RPE + P+YG+    Y LTE QAQAIL+LRL +LTGLE +KI+ +YK+
Sbjct: 421 TEMLARASLDATRPEGIAPEYGLSAQGYRLTEAQAQAILELRLQRLTGLERDKIVADYKE 480

Query: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVV 539
           LLE+IA LM ILA  ER+ E+I EEL AIR  F D RR+EI A   D+ +E+LI  +D+V
Sbjct: 481 LLEKIADLMDILARPERVTEIIGEELTAIRDQFGDDRRSEIVAYAQDLGIEDLITPQDMV 540

Query: 540 VTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTY 599
           VTLSH GY+K Q L+DY AQRRGG+GK A  MK++D+++ L VANTHD IL FS RG+ Y
Sbjct: 541 VTLSHTGYIKSQPLADYRAQRRGGRGKQAAAMKDDDFVDHLFVANTHDYILCFSNRGRCY 600

Query: 600 RMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSL 659
            +KVY++P  SR +RGKPI+N+ P+EE E+I AILPV EFS+DK++FM T  GTVKKTSL
Sbjct: 601 WLKVYEVPQGSRISRGKPIINMFPMEEGEQINAILPVKEFSDDKYVFMCTVQGTVKKTSL 660

Query: 660 DQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQ 719
             F+N R  G+IA++L + D LIG D+T G+S+I+L S  GK V F E +          
Sbjct: 661 ANFSNPRKAGIIAVDLDEGDYLIGADLTTGQSDIVLVSDGGKAVWFGEDQ---------- 710

Query: 720 PVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTENGYGK 778
                          VRPMGR + GVRGM L +G  V+SL+V ++E + VL  TENGYGK
Sbjct: 711 ---------------VRPMGRQSRGVRGMMLQEGQSVISLLVAESEEETVLVATENGYGK 755

Query: 779 RTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQ 838
           RT L ++    RGTQGV++I  SERNG +V A  V + DE M+IT  G L+RTRVAE+ +
Sbjct: 756 RTRLGDFRRSSRGTQGVMAIAASERNGKIVAAKLVTDADEVMLITTGGVLIRTRVAEIRE 815

Query: 839 VGRNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGEEALVENDAPVAQDDDGEQE 894
           +GR TQGVTLI    GE + GL+++ E E     E  + L + +     +D    E
Sbjct: 816 LGRATQGVTLISLDAGEKLSGLEKVAESEGDTDAEAGDELADGEMLEGGEDSAASE 871