Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 769 a.a., DNA topoisomerase IV subunit A from Marinobacter adhaerens HP15

 Score =  398 bits (1022), Expect = e-115
 Identities = 270/723 (37%), Positives = 400/723 (55%), Gaps = 67/723 (9%)

Query: 11  VNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVV 70
           V++ D    +YLDY+M VI+ RALP+V DGLKPV RR+++AM+ LG      YKKSAR V
Sbjct: 14  VSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLKSTSKYKKSARTV 73

Query: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEVRMSK 129
           GDV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+GS D   S AAMRYTE R++ 
Sbjct: 74  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRYTESRLAP 133

Query: 130 IAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGE 189
            A  LL +L + TVD+VPN+DGT   P+VLP ++P++L+NG +GIAVGMAT+IPPHN+ E
Sbjct: 134 FAEVLLGELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDIPPHNVRE 193

Query: 190 VIDGCLAYIDNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEI 248
           V   C+  +D    T+DEL ++I GPDFPT A +I+ RK I   Y+TGRG + MR++   
Sbjct: 194 VTAACIRLLDQPESTVDELCEHIKGPDFPTQAEIITPRKDIRQMYETGRGSLRMRARWIR 253

Query: 249 ETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECK 307
           E+ +     I+V+++P+QV+  R++E+IA  ++ KK+  ++ LRDESD +   R+VI  +
Sbjct: 254 ESGE-----IVVTDLPHQVSGNRVLEQIAHQMQTKKLPMVADLRDESDHENPTRLVIVPR 308

Query: 308 RDAVG-EVVLNNLYANTQLQTTFGINMVALDN-GQPKLFNLKEMLKCFVDHRREVVTRRT 365
            + V  + ++ +L+A+T L+ T+ +N+  + N G+P +  L ++L  ++  RR  V RR 
Sbjct: 309 SNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLHQILTEWLTFRRTTVIRRL 368

Query: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425
              L K   R HILEGL +A  NIDE+IE+IR   T  + K  L+AR             
Sbjct: 369 QHRLDKVLARLHILEGLLIAYLNIDEVIEIIR---TEDKPKAELMAR------------- 412

Query: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485
                                + L+  QA+AIL+L+L  L  LE  KI  E  +L  E  
Sbjct: 413 ---------------------FGLSADQAEAILELKLRHLAKLEEMKIRGEQDELAAERD 451

Query: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEE--LIAREDVVVTLS 543
            L  IL S +RL E+I+ E++A    F D RR+ I          E  LI+ + V V LS
Sbjct: 452 ELQSILGSEDRLRELIKSEMQADAETFGDDRRSPIVEREEAKAFSEVDLISNDPVTVVLS 511

Query: 544 HEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKV 603
            +G+V+     D E +    K      +            N    I L ST G+ Y +  
Sbjct: 512 EKGWVRAAKGHDIEPEGLSYKAGDRFSLAARG-------RNNQQTIFLDST-GRAYSLMA 563

Query: 604 YQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFA 663
           +  P  S   +G+P+   +        + +L + + S    +    G G V  TSL+   
Sbjct: 564 HSFP--SARGQGEPLTGRINPPSGASFSGLL-MGDPSRKALLVTDGGYGFV--TSLNDMI 618

Query: 664 NVRANGLIALNLRDEDSLIGVDITDGESEIMLF----SKFGKVVRFKESEETAVVDENGQ 719
           +   NG   +++  + + I   +T   +E  L+    S  G+++ F  SE   +    G 
Sbjct: 619 SKNRNGKAVVSV-PKGARIMPPLTIPTTEKTLYLGAVSNEGRMLVFPLSELPELAKGKGN 677

Query: 720 PVL 722
            ++
Sbjct: 678 KII 680



 Score = 33.9 bits (76), Expect = 4e-05
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 698 KFGKVVRFKESEETAVVDENGQPV-LDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQV 756
           +F    R + +++T  +D  G+   L  +  P  + +G    GR       +    G   
Sbjct: 536 RFSLAARGRNNQQTIFLDSTGRAYSLMAHSFPSARGQGEPLTGR-------INPPSGASF 588

Query: 757 VSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSER 803
             L++       L VT+ GYG  TSL++  +K R  + VVS+    R
Sbjct: 589 SGLLMGDPSRKALLVTDGGYGFVTSLNDMISKNRNGKAVVSVPKGAR 635