Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 758 a.a., DNA topoisomerase IV, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  376 bits (965), Expect = e-108
 Identities = 234/639 (36%), Positives = 366/639 (57%), Gaps = 63/639 (9%)

Query: 20  SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79
           +YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG      +KKSAR VGDV+GKYHP
Sbjct: 24  AYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKSARTVGDVLGKYHP 83

Query: 80  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEVRMSKIAHELLADL 138
           HGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+SK +  LL++L
Sbjct: 84  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEARLSKFSEVLLSEL 143

Query: 139 DKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYI 198
            + TV++  N+DGT + P VLP ++P++L+NG +GIAVGMAT+IPPHN+ E+++ C+A +
Sbjct: 144 GQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPPHNVRELVNACVALL 203

Query: 199 DNEAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKET 257
           D   + +++LM Y+PGPD+PT A +I+    I   Y+TGRG +  R+   +E  +     
Sbjct: 204 DEPKLDLEQLMAYVPGPDYPTEAEIITPAADIAKIYETGRGSLKARAVYSVEAGE----- 258

Query: 258 IIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKRDAVG-EVV 315
           I+++ +P+Q +  +++E IA  ++ KK+  ++ LRDESD +  +R+VI  + + V  + +
Sbjct: 259 IVITALPHQASSGKILELIAAQMQAKKLPMVADLRDESDHENPVRLVIVPRSNRVDCDQL 318

Query: 316 LNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKARE 374
           + +L+A T L+ +F +N+  L  +G+P++  LK++L  +++ R + V RR  + L K   
Sbjct: 319 MAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLTEWLEFRVDTVRRRLEYRLDKVLA 378

Query: 375 RAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARPE 434
           R HILE L +A  NIDE+IE+IR    P   K  L+AR                      
Sbjct: 379 RLHILEALMIAFLNIDEVIEIIRFHDEP---KAELMAR---------------------- 413

Query: 435 WLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILAST 494
                       + LT++QA+AIL+L+L  L  LE  KI  E  +L  E   L  +L S 
Sbjct: 414 ------------FNLTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLGSE 461

Query: 495 ERLMEVIREELEAIRAGFSDARRTEITA--ATHDIDMEELIAREDVVVTLSHEGYVKYQL 552
            RL  +I++EL      + D RR+ I     +  +  +EL   E V V LS +G+V+   
Sbjct: 462 RRLKTLIKKELIQDGETYGDDRRSPIVERHESKALTEQELTPSEPVTVVLSDKGWVRSAK 521

Query: 553 LSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRT 612
             D +A+        +   K  D      +  ++   +   + G+ +    + LP  S  
Sbjct: 522 GHDIDAE--------SLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLP--SAR 571

Query: 613 ARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGD 651
           ++G+PI     +   E +  ++      ED+  F+   D
Sbjct: 572 SQGEPITTRFNMAPGETMQHVI----LGEDEQCFLLATD 606