Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 919 a.a., DNA gyrase, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1328 bits (3438), Expect = 0.0
 Identities = 675/897 (75%), Positives = 773/897 (86%), Gaps = 6/897 (0%)

Query: 1   MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
           M+DLA  I+P+NIEDEL++SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM+ L NDWN
Sbjct: 1   MTDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWN 60

Query: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
           K YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY LVDGQGNFGS+DGDSAAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAM 120

Query: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
           RYTE+RM K+AH+LLADL+KETVDYVPNYDGTEQIPAVLPT++PNLLING+SGIAVGMAT
Sbjct: 121 RYTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
           NIPPHNL EV+ GCLA I + A++I++LMDYIPGPDFPTAA+I+GRKGIIDAYKTGRG+ 
Sbjct: 181 NIPPHNLTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAIINGRKGIIDAYKTGRGRA 240

Query: 241 YMRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGM 300
            MR+ AE+ET++NG+E IIV+EIPYQVNKARLIEKIAELVK+KK+EGIS LRDESDKDGM
Sbjct: 241 IMRALAEVETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 301 RIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREV 360
           RIVIE KR  VGEVVLNNLYA TQ+Q +FGINMVAL NGQPKLFNLKEML+CF+ HRREV
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREV 360

Query: 361 VTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVA 420
           VTRRT+FELRKARERAHILE LA+ALANID II LI+ + TPA+AK  L+ +GW LG+V 
Sbjct: 361 VTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQ 420

Query: 421 AMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQL 480
            MLE+AG DAARPEWLEP+YGIRDG Y+LTEQQAQAIL+LRLH+LTGLEH+KI+ EY++L
Sbjct: 421 GMLEKAGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEEL 480

Query: 481 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVV 540
           LE IA L+ IL S ERLMEVI+EELE I A + DARRT I A   D+ +E+LI  EDVVV
Sbjct: 481 LEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVV 540

Query: 541 TLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYR 600
           TLSH GY KYQ LSDY+AQRRGGKGK ATK+K+ED++E+LLVANTHD IL FS  GK Y 
Sbjct: 541 TLSHLGYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGKMYW 600

Query: 601 MKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLD 660
           +KVYQLPLASRT+RG+PIVNLLPL + ERITAILPV E++EDK+I MAT +GTVKKT+L 
Sbjct: 601 LKVYQLPLASRTSRGRPIVNLLPLADGERITAILPVREYAEDKYIIMATSNGTVKKTALT 660

Query: 661 QFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQP 720
            ++N RANG+IA+NL+D D LIGVDIT+G+ EIMLFS  GKVVRFKE EE AV+DENG P
Sbjct: 661 AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNP 720

Query: 721 VLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRT 780
           VLDE G P+I FKGVRPMGR A GVRG+KL +G +VVSLIVPK +G +LTVTENGYGKRT
Sbjct: 721 VLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKDDGAILTVTENGYGKRT 780

Query: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG 840
            LSEYP+K R T+GVVSIKVSERNG+VVGAVQV   DE M+I++ GTLVRT    VS +G
Sbjct: 781 ELSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIG 840

Query: 841 RNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGEEALVEND---APVAQDDDGEQE 894
           RNTQGVT+IRT+  E VVGLQRIDEI+     E E  L EN    APV  + D  QE
Sbjct: 841 RNTQGVTIIRTASDEKVVGLQRIDEIQGD---EDEVELDENGMPIAPVIAEGDSVQE 894