Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 856 a.a., DNA gyrase, A subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  813 bits (2101), Expect = 0.0
 Identities = 420/882 (47%), Positives = 590/882 (66%), Gaps = 63/882 (7%)

Query: 11  VNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVV 70
           ++IE ELR SYL+Y++SVI+GRA+PDVRDGLKPVHRR++FA + LGN +N+ +KKSAR+V
Sbjct: 26  ISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSARIV 85

Query: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKI 130
           GDVIGKYHPHGDSAVYD IVRMAQ FS+R  LVDGQGNFGSIDGD+AAAMRYTEVRMS++
Sbjct: 86  GDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSRL 145

Query: 131 AHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEV 190
           A E +AD++KETVD+ PNYD T   P VLPT++PNLL+NG++GIAVGMATNIPPHNLGE+
Sbjct: 146 AGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLGEL 205

Query: 191 IDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKAEIET 250
            +  L  +D++A TID+LMD++ GPDFPT   +   +G++DAY TGRG V +R K EIE 
Sbjct: 206 CNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEIEE 265

Query: 251 DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECKRDA 310
            K G + I++ EIPY +NK+ L+EKIA LV E++++G++ LRDESD+ G+R+VI+ KR  
Sbjct: 266 RKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKRGT 325

Query: 311 VGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELR 370
           + ++V+N LY  T L++++GINM+A+ + +P+L +LK  L  F++HRRE++ RRT ++LR
Sbjct: 326 IPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYDLR 385

Query: 371 KARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDA 430
           KA  RAHILEGL +AL NIDE++ LIR +ATP EAK+ L+ R                  
Sbjct: 386 KAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR------------------ 427

Query: 431 ARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHI 490
                           + L+E Q+QAILD+RL +LT LEHEK+LDEY++LL++I     I
Sbjct: 428 ----------------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSI 471

Query: 491 LASTERLMEVIREELEAIRAGFSDARRTEITA-ATHDIDMEELIAREDVVVTLSHEGYVK 549
           L + E L +V+REE   IR  ++  RRTE+       I +E+LI  +DVV+TLS  GY+K
Sbjct: 472 LENIEVLRQVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIK 531

Query: 550 YQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLA 609
              L +Y+ QRRGGKG +     ++D+++  L    H  +LLF+  GK +++KV+Q+   
Sbjct: 532 RTTLDNYQQQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEG 591

Query: 610 SRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG 669
           SRTA+G  I NLLPLE++E +T +L V EF+ED+F    T  G VK++S   +A  R  G
Sbjct: 592 SRTAKGVHIANLLPLEKDEWVTTVLSVREFAEDRFFLFVTKRGMVKRSSASLYARARKGG 651

Query: 670 LIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPE 729
           LIA+ LRD+D LI V     +  ++L +  G  +RF   +                    
Sbjct: 652 LIAVGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPD-------------------- 691

Query: 730 IKFKGVRPMGRTAAGVRGMKLADGDQVVSLIV---PKTEGDVLTVTENGYGKRTSLSEYP 786
                VRPMGR+A GV+G+ L+  D+VV+  V     T  ++++++ NGYGKRT +  Y 
Sbjct: 692 -----VRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTEIMSISSNGYGKRTRIELYR 746

Query: 787 TKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846
            + RG +GV + +V+ + G V+GA+ V + +  +++T+   ++R  V EV  VGR T GV
Sbjct: 747 LQSRGGKGVKNFRVTPKTGDVIGAMPVRDDEALVLLTSTNKIIRMSVDEVRSVGRATMGV 806

Query: 847 TLIRTSEGESVVGLQRIDEIEESELPEGEEALVENDAPVAQD 888
            L+R  EG  VVG  R+DE E  E     ++  +  AP   D
Sbjct: 807 MLVRLDEGAIVVGFDRVDEREVVEESAPAQSSEQKTAPEGGD 848