Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 777 a.a., DNA topoisomerase IV, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  434 bits (1115), Expect = e-125
 Identities = 262/627 (41%), Positives = 369/627 (58%), Gaps = 37/627 (5%)

Query: 21  YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 80
           YL YA+S I+ RALPD RDGLKPVHRR+L+AM  L       ++KSA++ GDV+G YHPH
Sbjct: 35  YLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISGDVMGNYHPH 94

Query: 81  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDK 140
           GD+A+YD + R+AQ F++RY LVDGQGNFG+IDGD+ AA RYTE R++  A  L+  L +
Sbjct: 95  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTAAAEALMEGLAE 154

Query: 141 ETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYIDN 200
             VD+  NYDGT   P VLP   PNLL NG+SGIAVGMATNIPPHNL E+IDGCL  I  
Sbjct: 155 NAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIAVGMATNIPPHNLHELIDGCLHLIRA 214

Query: 201 EAITIDELMDYIPGPDFPT-AALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKETII 259
                + L++ IPGPDFPT   ++  ++ I  AY TGRG   +R++   E    G+  I+
Sbjct: 215 PNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYATGRGAFRLRARWAREDLGRGQWQIV 274

Query: 260 VSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECKRDAVG-EVVLNN 318
           ++EIPYQV K++LIEKIA+L++ KKV  ++ +RDES  D +RI++E +   V  EV++  
Sbjct: 275 ITEIPYQVQKSKLIEKIADLIQTKKVPILADIRDES-ADDVRIILEPRSKNVDPEVLMGT 333

Query: 319 LYANTQLQTTFGINM-VALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKARERAH 377
           L+  ++L+T F +NM V +D   PK+ +L+E+L+ F+DHRR+V+ RR+   L K   R  
Sbjct: 334 LFRLSELETRFSLNMNVLIDGRTPKVCSLREVLRAFLDHRRDVLGRRSRHRLAKIDHRLE 393

Query: 378 ILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARPEWLE 437
           +LEG  +A  N+D +I++IR    P   K  L+   W L +V A      TD A  +   
Sbjct: 394 VLEGFLVAFLNLDRVIDIIRYDEDP---KAALMREDWSLKHVRA------TDEADYKTPA 444

Query: 438 PQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERL 497
           P      G+  LTE QA+AIL++RL  L  LE  +++ E   L+ E A L  +LA     
Sbjct: 445 P------GEGELTEVQAEAILNMRLRSLRRLEEMELISERDALMAERAELEDLLADEALQ 498

Query: 498 MEVIREELEAIRAGFSDA-----RRTEITAATH--DIDMEELIAREDVVVTLSHEGYVKY 550
              I +EL  +R  F        RRT+   AT   ++ +E++I RE + V  S  G+++ 
Sbjct: 499 WARIADELREVRKQFGKGTALGKRRTDFAVATEMAEVSLEDMIEREPITVVCSKMGWIR- 557

Query: 551 QLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLAS 610
                  A +       A K K+ D    +  A T D +L F   G+ Y +    LP   
Sbjct: 558 -------AMKGHVALDQALKFKDGDEGRFIFHAETTDKLLAFGANGRFYTLSCAALP--G 608

Query: 611 RTARGKPIVNLLPL-EENERITAILPV 636
               G+PI  ++ L  E E +   L V
Sbjct: 609 GRGMGEPIRLMVDLPNEAELVDLFLHV 635