Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 919 a.a., DNA gyrase subunit A from Caulobacter crescentus NA1000

 Score =  796 bits (2056), Expect = 0.0
 Identities = 428/893 (47%), Positives = 585/893 (65%), Gaps = 44/893 (4%)

Query: 7   EITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66
           +I P+NIEDELR SYLDYAMSVIV RALPD RDGLKPVHRRVLF+M+  G    + Y KS
Sbjct: 16  DIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQTPERPYVKS 75

Query: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126
           ARVVGDV+GKYHPHGD+++Y T+VRM Q FS+  +L+DGQGNFGS+DGD  AAMRYTE R
Sbjct: 76  ARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGSVDGDMPAAMRYTECR 135

Query: 127 MSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHN 186
           M+  A  LLADLDK+TVD+  NYDG EQ P VLP++IPNLL+NGA GIAVGMATNIPPHN
Sbjct: 136 MAPPAMALLADLDKDTVDFADNYDGKEQEPTVLPSRIPNLLVNGAGGIAVGMATNIPPHN 195

Query: 187 LGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKA 246
           LGEVID CL  ID   +T D+L+D +PGPDFPT   I GR G   A  TGRG V MR  A
Sbjct: 196 LGEVIDACLLLIDQPDVTTDQLLDLVPGPDFPTGGEIIGRAGPRQALLTGRGSVIMRGVA 255

Query: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306
            +E  + G+E IIV+EIPYQVNKA L+E IAELV++KK+EG++ +RDES++DGMRIV+E 
Sbjct: 256 SVEELRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKIEGVADIRDESNRDGMRIVVEL 315

Query: 307 KRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTI 366
           KRDA GEV+LN LY  T LQ++FG+NM+AL+ G+P+   L ++++ FVD R EVV RRT 
Sbjct: 316 KRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHQLIQLFVDFREEVVVRRTK 375

Query: 367 FELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERA 426
           FEL KAR+R H+L GL +A+ANIDE I +IR +  P EA+E L+A+ W  G++  ++E  
Sbjct: 376 FELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKSWPAGDMLPLVELI 435

Query: 427 GTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAA 486
               A P  ++   G+      LT++QA+AIL L L +LTGL  ++I +E   L + I  
Sbjct: 436 ----ADPRTVQEDGGL----IRLTDEQARAILALTLSRLTGLGRDEIGNEAAALADAIRG 487

Query: 487 LMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEG 546
            + +L+    +M V+REEL  +R  F+  RR +I     D++ E+LI RED+V+T++  G
Sbjct: 488 YLELLSDRANIMAVVREELVEVREKFAIPRRCQIVDGDADMEDEDLIVREDMVITVTMGG 547

Query: 547 YVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQL 606
           YVK   L++Y  Q RGGKGKS    K ED + R+  A+TH  +L F++ GK Y+MKV++L
Sbjct: 548 YVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVYKMKVWRL 607

Query: 607 PLASRTARGKPIVNLLPLEENERITAILPVTEFSED---KFIFMATGDGTVKKTSLDQFA 663
           PL    +RGK  VNLLP+E  E IT+IL + E         +  AT  G+V++  L  F 
Sbjct: 608 PLGVANSRGKAFVNLLPIEPGETITSILALPEDEATWGGLDVMFATRSGSVRRNKLSDFV 667

Query: 664 NVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDEN-----G 718
           +VR NG IA+ L + D ++GV + + + +++L +  G+ +RF   E       +     G
Sbjct: 668 DVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDSTGVRG 727

Query: 719 QPVLDEN---------------GQPEIKFKGVRPMGRTAAGVRGMKLA----DGDQVV-- 757
             +LD +                +     K  R M R A G  G   A    DGD+ V  
Sbjct: 728 VKLLDGDQVISMAVLRSVDATPAERAAYLKHQRAMLRAADGEEGEDTATAADDGDEEVGE 787

Query: 758 SLIVPK-------TEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810
           + + P+        E  +LTV+  G+GKRTS  ++   GRG QG+ +  +S+R G +VG+
Sbjct: 788 ASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRGGRLVGS 847

Query: 811 VQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRI 863
             + E D+ +++T+ G L+R  V+++    RNTQGVT+ RT++ E VV ++R+
Sbjct: 848 FPIDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVERL 900