Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 759 a.a., topoisomerase IV subunit A from Caulobacter crescentus NA1000

 Score =  427 bits (1099), Expect = e-124
 Identities = 255/646 (39%), Positives = 377/646 (58%), Gaps = 75/646 (11%)

Query: 13  IEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGD 72
           + + L   YL YA+S I  RALPDVRDGLKPVHRRVL+AM+ +  + + A +K A+VVG+
Sbjct: 23  LTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCAKVVGE 82

Query: 73  VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAH 132
           V+G +HPHGD+++YD +VR+AQ FS R  LV+GQGNFG+IDGDSAAAMRYTE +M++ A 
Sbjct: 83  VMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECKMTEAAM 142

Query: 133 ELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVID 192
            LL  +D++ VD+ P YDG ++ P VLP+  PNLL NG+SGIAVGMAT+IPPHN  E+ID
Sbjct: 143 LLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNAAELID 202

Query: 193 GCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKAEIETD 251
            C   + N   T  +L++ +PGPDFPT  +I   R  +++ Y+TGRG V MR+K E E  
Sbjct: 203 ACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAKWEKEDT 262

Query: 252 KNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECK-RDA 310
             G   I+V+EIPYQV K+ L+E++A+L+  KK   +  +RDES +D +R+V+E K ++ 
Sbjct: 263 GRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAED-IRLVLEPKSKNV 321

Query: 311 VGEVVLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFVDHRREVVTRRTIFEL 369
             EV++ +L+  + L++ F +N+  LD  G P +  +K+ L  F+ HRREV+TRR    L
Sbjct: 322 EPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRRARHRL 381

Query: 370 RKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTD 429
            K   R HIL+GL +A  N+DE+I ++R    P E                 ++E  G  
Sbjct: 382 AKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKEK----------------LIETFG-- 423

Query: 430 AARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMH 489
                              LT+ QA AIL+ RL +L  LE  +I  E+ +L+EE   ++ 
Sbjct: 424 -------------------LTDIQADAILNTRLRQLAKLEEMEIRREHAELVEERDGILA 464

Query: 490 ILASTERLMEVIREELEAIRAG-------FSDARRTEITAAT---------HDIDMEELI 533
           +LAS  +  +++   L  +RA            R T +T  +          D  +E +I
Sbjct: 465 MLASEAKQWKLVGVGLSEVRAALLKIKHPLDKPRPTGVTGRSVFGEAPQVDADAAIEAMI 524

Query: 534 AREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGK----SATKMKEEDYIERLLVANTHDNI 589
            RE + + LS  G++            R  KGK    S  K KE D +  L+ A T D +
Sbjct: 525 VREPITIILSERGWI------------RAAKGKIDDPSELKFKEGDKLGFLVPAETTDKL 572

Query: 590 LLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILP 635
           L+FS+ G+ + +   +LP  S    G+P+  ++ L++  +I  + P
Sbjct: 573 LIFSSDGRFFTLGCDKLP--SARGHGEPVRMMIELDDKVKIIDVFP 616