Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 850 a.a., topoisomerase IV subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  181 bits (458), Expect = 2e-49
 Identities = 158/616 (25%), Positives = 294/616 (47%), Gaps = 90/616 (14%)

Query: 21  YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 80
           +LDYA  VI+ RA+P + DGLKPV RR+L +M  L +     Y K A +VG  + ++HPH
Sbjct: 6   FLDYASYVILERAVPHINDGLKPVQRRILHSMKRLDDG---RYNKVANIVGHTM-QFHPH 61

Query: 81  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEVRMSKIAHELLADLD 139
           GD+++ D +V++ Q    + +L+D QGN+G+I  GD AAA RY E R+SK A +++   +
Sbjct: 62  GDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALDIV--FN 115

Query: 140 KETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYID 199
            +T ++  +YDG  + P  LP K P LL  G  GIAVG+++ I PHN  E+ D  ++Y+ 
Sbjct: 116 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLH 175

Query: 200 NEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKETII 259
            E+  +         PDF T        G ID  K   G+     K   + +K   +T+ 
Sbjct: 176 GESFQL--------YPDFQTG-------GSIDVAKYNDGERGGAVKVRAKINKLDNKTLA 220

Query: 260 VSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECKRDAVGEVVLNNL 319
           ++EIPY    + +I+ I + V + K++      D++    + I++        +  ++ L
Sbjct: 221 ITEIPYGKTTSTVIDSILKAVDKGKIKIRKV--DDNTAANVEILVHLAPGTSSDKTIDAL 278

Query: 320 YANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIFELRKARERAHIL 379
           YA T  + +   N   +D+ +P    + ++LK   D+   ++ +    E++K      IL
Sbjct: 279 YAFTDCEVSISPNCCVIDDSKPHFLTVSKVLKKSADNTLGLLKQE--LEIKK----GEIL 332

Query: 380 EGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAGTDAARPEWLEPQ 439
           E L  A      I E I +     ++K        D+    A ++    D   P +  P 
Sbjct: 333 ESLHFASLEKIFIEERIYKDKEFEQSK--------DMDAACAHID----DRLTPFY--PS 378

Query: 440 YGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAA----LMHILASTE 495
           + IR+    +T++    ++++++ ++     +K  +   ++ EEIA     L HI+  T 
Sbjct: 379 F-IRE----VTKEDILKLMEIKMGRILKFNTDKADELIARMKEEIAEIDDHLAHIVDYTV 433

Query: 496 RLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEGYVKYQLLSD 555
              ++++      + G +  RRTE+      I+  +++   + +     EG++       
Sbjct: 434 NWYQMLKS-----KYGKNFPRRTEL-RNFDTIEAAKVVEANEKLYINRDEGFI------- 480

Query: 556 YEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARG 615
                        T +K+++++      +  D++++F   G     K    P+A +   G
Sbjct: 481 ------------GTALKKDEFVAN---CSDIDDVIVFFRDG-----KYIVTPVADKKFVG 520

Query: 616 KPIVNLLPLEENERIT 631
           K I+ +   ++N++ T
Sbjct: 521 KNILYVNVFKKNDKRT 536