Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., DNA gyrase subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  784 bits (2025), Expect = 0.0
 Identities = 417/896 (46%), Positives = 596/896 (66%), Gaps = 74/896 (8%)

Query: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67
           I  +NIE+E++SSY+DY+MSVIV RALPDVRDG KPVHRR+L+ M  LGN  +K YKKSA
Sbjct: 7   IIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSA 66

Query: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127
           R+VG+V+GKYHPHGDS+VY  +VRMAQ +++RY LVDGQGNFGS+DGDS AAMRYTE R+
Sbjct: 67  RIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126

Query: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187
           +K+   ++ DL KETVD+ PN+D T   P V+PT+IPNLL+NGASGIAVGMATN+PPHNL
Sbjct: 127 NKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMPPHNL 186

Query: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKAE 247
            EVID C AYIDN+ IT++ELM Y+  PDFPT   I G  G+ + Y TGRG+V MR+KAE
Sbjct: 187 SEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMRAKAE 246

Query: 248 IETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECK 307
           IET +   + I+V+EIPY VNKA LI+ IA+LV +K++EGIS   DESD+DGMRIVI+ K
Sbjct: 247 IETGQT-HDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIVIDVK 305

Query: 308 RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRTIF 367
           RDA   VVLN LY  T LQT+FG+N VAL +G+PK  NL++M+K FV+HR EVV RRT F
Sbjct: 306 RDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIRRTQF 365

Query: 368 ELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLERAG 427
           +LRKA+ERAHILEGL +A  NIDE+I +IR A TP +A  GLI R               
Sbjct: 366 DLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER--------------- 410

Query: 428 TDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAAL 487
                              + LTE Q++AI+++RL +LTGL  +++  EY++++++IA L
Sbjct: 411 -------------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYL 451

Query: 488 MHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEGY 547
             ILA  E   +V+++EL  ++A + D RR+EI  ++ + + E+  A + +++T+SH GY
Sbjct: 452 ESILADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGY 511

Query: 548 VKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLP 607
           +K   L+++ AQ RGG G   T+ ++ D++E +  A  H+ ++ F+ +GK Y +KVY++P
Sbjct: 512 IKRTPLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIP 571

Query: 608 LASRTARGKPIVNLLPLEENERITAILPV-----TEFSEDKFIFMATGDGTVKKTSLDQF 662
             ++ ++G+ I NLL ++ ++ +TA L V     TE+    ++   T  G +KKT L+Q+
Sbjct: 572 EGTKNSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQY 631

Query: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722
           +  R NG+ A+ +R++DS+I V +T+G +EI++ ++ G+ +RF E+              
Sbjct: 632 SRPRQNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEA-------------- 677

Query: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKL-ADG-DQVVSLIVPK---TEGDVLTVTENGYG 777
                       VR MGRTA GVRG+ L  DG D+V+ +I  K   TE  V+ V+E GYG
Sbjct: 678 -----------AVRVMGRTATGVRGITLDNDGQDEVIGMICIKDLETE-SVMVVSEQGYG 725

Query: 778 KRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVS 837
           KR+ + +Y    RG +GV ++ ++E+ G +V    V + ++ M+I  +G  +R +VA+V 
Sbjct: 726 KRSEIEDYRKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785

Query: 838 QVGRNTQGVTLIRTSEGESVVG--LQRIDEIEESELP-EGEEALVENDAPVAQDDD 890
            +GR TQGV LI   +    +G   + + E  E E+P E  E  + +D    QD D
Sbjct: 786 IMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEVPAEEAEGTIVSDLTTDQDVD 841