Pairwise Alignments

Query, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

Subject, 774 a.a., DNA topoisomerase IV subunit A from Burkholderia phytofirmans PsJN

 Score =  380 bits (977), Expect = e-109
 Identities = 245/655 (37%), Positives = 356/655 (54%), Gaps = 73/655 (11%)

Query: 20  SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVGDVIGKYHP 79
           +YLDYA+SV+ GRALPDV DG KPV RR+LFAMN +G   N    KSARVVGDV+GKYHP
Sbjct: 30  AYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVVGDVLGKYHP 89

Query: 80  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLD 139
           HGD + YD +VR+AQ FS+RY L+DGQGNFGS DGD AAAMRYTE R++ IA  LL +++
Sbjct: 90  HGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDEIN 149

Query: 140 KETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEVIDGCLAYID 199
           + TVD++PNYDG+ + P +LP ++P +L+NGASGIAVG+AT IP HNL EV    +A I 
Sbjct: 150 QGTVDFMPNYDGSSEEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAATVAMIR 209

Query: 200 NEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSKAEIETDKNGKETI 258
           N  I   ELM +I GPDFP  A +IS    I  AY++GRG + +R++ +IE    G+  +
Sbjct: 210 NPKIEHAELMQHIAGPDFPGGAQIISSDAEISAAYESGRGSLKVRARWKIEELARGQWQL 269

Query: 259 IVSEIPYQVNKARLIEKIAELVKEKKVEG------------------ISALRDESDKDG- 299
           +++E+P      +++E+I E    K   G                  + A+RDES +D  
Sbjct: 270 VITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQTKQTMLALLDAVRDESGRDAP 329

Query: 300 MRIVIECKRDAVGEV-VLNNLYANTQLQTTFGINMVALD-NGQPKLFNLKEMLKCFVDHR 357
           +R+V E K   + +   +N L A T L++   +NMV +  +G+P+   L E+L  ++  R
Sbjct: 330 VRLVFEPKSSRIDQTDFVNTLLAYTSLESNASLNMVMVGGDGRPRQKGLSEILHEWIAFR 389

Query: 358 REVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLG 417
              VTRRT   L K  +R HILEG  +   NIDE+I +IR +  P               
Sbjct: 390 FATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEP--------------- 434

Query: 418 NVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEY 477
            VA M                        + L+++QA+ IL++RL +L  LE  KI  E 
Sbjct: 435 KVALM----------------------AAFGLSDRQAEDILEIRLRQLARLEKIKIEKEL 472

Query: 478 KQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIARED 537
            +L +E A L  +L S   +  ++ +E+E     + D RRT I         E  +  E 
Sbjct: 473 AELRDEKAKLEELLGSESAMKRLLIKEIEGDAKQYGDERRTLIQQEKR-ATFEARVVDEP 531

Query: 538 VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGK 597
           V V +S +G+V+        A +  G   +    K  D +       T D ++ + + G+
Sbjct: 532 VTVVVSQKGWVR--------ALKGHGLDVAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGR 583

Query: 598 TYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDG 652
            Y + V  LP       G P+ +L+ LE       +L     S ++ + +A+ +G
Sbjct: 584 VYSVAVAMLP--GGRGDGVPVTSLIELESGSH---LLHYYAASAEQALLLASSNG 633