Pairwise Alignments

Query, 415 a.a., competence/damage-inducible protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., competence/damage-inducible protein CinA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  260 bits (665), Expect = 5e-74
 Identities = 156/425 (36%), Positives = 237/425 (55%), Gaps = 30/425 (7%)

Query: 5   LKIAMLSTGEEVLHGDIVDSNAAWLAREFYQHGFSLAKRATVGDSLPALVEELMMLSFNS 64
           +K+ M+ TGEEVL G IVD+NAAW A    +HG  + +R TVGD L  L+      S ++
Sbjct: 1   MKLEMICTGEEVLSGQIVDTNAAWFASTMMEHGIEIQRRVTVGDRLEDLIAVFQERSLHA 60

Query: 65  DVVIVNGGLGPTSDDITAQAAAQAAEQPLVLNADWLSQLEAFFIGRGRAMPESNRKQAML 124
           DV++VNGGLGPTSDD++A+A A+A  + LV N++W  +LE +F    R MP SN KQAML
Sbjct: 61  DVILVNGGLGPTSDDMSAEAMAKAKGESLVENSEWRQRLEDWFTRNNREMPVSNLKQAML 120

Query: 125 PANAEVIDNPIGTACGFKMQINDCWFYFTPGVPKEFYKMVSEQILPNLQRQFPSVQGQQC 184
           P +A ++DNP+GTACGF++++N  W +FTPGVP E   MV EQ +P ++ +F        
Sbjct: 121 PVSAVMVDNPVGTACGFRVKLNRAWLFFTPGVPFELKHMVKEQFIPFIRDEFNLDAKVAL 180

Query: 185 SRLYTFGTSESSISDKLDKMHLPEGYTLGYRSYLPFIEVKLFGPDQDQERRLSLLKIIHS 244
            +L T G  ES+++DK++ + LPEG T+GYRS +P IE+K+F      E+ ++LL  +  
Sbjct: 181 KKLLTIGHGESALADKIEPLELPEGITIGYRSSMPHIEIKIFARG---EKAIALLPRVAG 237

Query: 245 HLEQY----VVSIDEPMLTYLGHV-MAEKGLSLALAEQATQGGLSSWLLSDPNVEALAGH 299
           H++      VV+ D+  L    H  +   GL+L+ AE  T G ++S L+  P   +   H
Sbjct: 238 HIKMVLGTAVVAEDKATLAEEIHFRLLNSGLTLSAAESCTGGMITSQLVDFPGSSSYLQH 297

Query: 300 SWI-LSHRVSSELAHQDP----------LAAAFALAGATKDKCGTQMALVTGAL------ 342
             +  S+     +   +P          +     +A   +    +  AL T  +      
Sbjct: 298 GLVTYSNESKVRVLGVNPATLDDHGAVSIPTVEEMAKGARAILDSDFALATSGIAGPDGG 357

Query: 343 KEDH----VSVALSTPNGEWGQTVKFVRRFSAQEQKEWIATLAADMLLRYLTGRSMFVGY 398
            ED     V++AL+T +G + Q +K  RR S    +   A +A DML R L   ++ V Y
Sbjct: 358 TEDKPVGTVAIALATRSGVYSQMIKLPRR-SRDLVRSLSAAVAYDMLRRELLSEAVIVDY 416

Query: 399 SAVER 403
            ++ R
Sbjct: 417 QSIGR 421