Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  290 bits (741), Expect = 1e-82
 Identities = 182/545 (33%), Positives = 296/545 (54%), Gaps = 16/545 (2%)

Query: 4   LENIKVSYKLAAIVIVGIVGFLSLLFISANALKENLVAEREARLKAVIQSTLSQVAY--- 60
           L N+ +S +L  I +V +V    L  +    ++ +L   ++   + V+++      +   
Sbjct: 4   LRNVPISKRLWLIPVVAVVMLFILGLLMIQQVRSDLYRGKQESTRHVVEAASGVFEHYRK 63

Query: 61  --LNQTLPKEQAQEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNPGKD 118
             L+  +   +AQ+ A   I  LR+DG +Y ++ D     ++HP++  L GQ +    KD
Sbjct: 64  LELSGAMTTAEAQKAAIEQIRLLRYDGQDYYWINDLGPTMIMHPMQPKLDGQDLSKI-KD 122

Query: 119 TEGQFWFT-MIDLARNGQQGSLIYPW-KNQQGNPADKLSFVNGFAPWGWILGSGMLLDDI 176
            EG+  F  M+ +A+    G + Y W K  + NP  K+S+V  F PWGWI+GSG+ +DD+
Sbjct: 123 PEGKELFNEMVRIAQRDGAGLVDYMWAKPGEENPVPKISYVQLFKPWGWIIGSGIYVDDV 182

Query: 177 EHAVYQQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQG--DLTAQIPV 234
           E   +    R     L+++ +M  L  ++ R++++PL      M  +A G  DLT  + V
Sbjct: 183 EQEFWNYLTRFSLIGLLISAIMAVLVAILIRSIVRPLRHTMAAMANIASGEADLTRTLDV 242

Query: 235 LGKDELGIVAQ---RINNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRD 291
            G DEL  + +   R    +  V   L E+  +    + +  +++  A E SQ    Q  
Sbjct: 243 SGNDELTTLGRDFNRFTQKLRTVVGQLFETAGALDQSSRSLSQLSGQAHEQSQ---QQML 299

Query: 292 QLSQLATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGV 351
           Q+ Q+ATA+N++T  V +VA +AE  + +   A  +A  G +++ +S+  I  LS  +G 
Sbjct: 300 QMEQVATAINEVTYAVQEVAKNAEHASSEVGSAENQAGQGQRNIETSLQQIDELSATIGQ 359

Query: 352 ATDQVNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNL 411
           A D +  L +   +I  V  VI  I+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR L
Sbjct: 360 AVDVIQSLADETTKIGSVLEVIGSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLL 419

Query: 412 ASRTHHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHV 471
           A RT  ST EI  MI RLQ+ + +  + + +S   +  +V  A  AG  L  I   ++++
Sbjct: 420 AQRTQQSTAEIHGMIERLQKNSGAAVNVIMESNRASQLTVEQASQAGESLGEIAQALRNL 479

Query: 472 SDKATQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKL 531
           S     IA+A  +QS V E++N+NV+     A E + AA   +E  ++L +L+ QL++ L
Sbjct: 480 SGLNASIASATLQQSHVVEDINQNVTQAAGLAQESTLAAEQSSEAGKQLGELAGQLNRLL 539

Query: 532 TAFKL 536
           + F++
Sbjct: 540 SQFRV 544