Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  213 bits (542), Expect = 1e-59
 Identities = 138/352 (39%), Positives = 201/352 (57%), Gaps = 4/352 (1%)

Query: 187 MGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQGDLTAQIPVLG-KDELGIVAQ 245
           MG   L++ ++ I     IS  V   L T    +K+ A GDLT ++     KDE  I+A 
Sbjct: 155 MGAIALVLFIIFI-FSYYISTFVGGALYTTVMALKRAADGDLTGRLNFFQVKDEFSILAI 213

Query: 246 RINNSIAAVHDALVESVQSASSVAEAAIR-IASSAEETSQAVVSQRDQLSQLATAMNQMT 304
            I++ +   H+ LV+S+  A+      +    ++A +      SQR  L  LATAM QMT
Sbjct: 214 SIDSLVERQHN-LVKSINDATRQIRTVVESFRTNARDGQALAASQRAHLDSLATAMEQMT 272

Query: 305 ATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVM 364
           A V +VA +AE ++++T +A+++   G KD+ ++V +I  LS E+  A+D V  L E   
Sbjct: 273 AAVREVASNAEHSSQETQEANQQVAAGSKDIATTVSAIGQLSNEIARASDAVTVLNENAS 332

Query: 365 QISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQT 424
           +I EV + I+ ISEQTNLLALNAAIEAARAG+QGRGFAVVADEVR LA RT  +T EI++
Sbjct: 333 RIDEVVTTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEIKS 392

Query: 425 MINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKATQIATAAEE 484
           MI  LQ  + +    M ++   A          G DL  I +H   V + +  IAT+AEE
Sbjct: 393 MIEALQSGSRNLTQVMARTVEQAEEGKKHVIKTGEDLDSIAHHSAKVFEMSVLIATSAEE 452

Query: 485 QSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKLTAFKL 536
           QSAVA E+  N+  I + + ++ Q+A       ++L   + +LD+ L   KL
Sbjct: 453 QSAVANEIAGNLMEIRNQSHDVEQSANQSVSGCDELHATAEKLDKLLVGLKL 504