Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., cache domain-containing protein from Rhodopseudomonas palustris CGA009

 Score =  229 bits (585), Expect = 2e-64
 Identities = 167/578 (28%), Positives = 272/578 (47%), Gaps = 81/578 (14%)

Query: 1   MLKLENIKVSYKLAAIVIVGIVGFLSLLFISANALKENLVAEREARLKAVIQSTLSQV-- 58
           ML   ++ +  ++  ++ +G VG + L  + +  L   L  +++  LK + +  +S V  
Sbjct: 1   MLSRLHLTIGRRIYLLIGLGFVGLIGLTLLDSRELATGLQQQKQIELKHLAELAISFVKD 60

Query: 59  ---AYLNQTLPKEQAQEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNP 115
              A     +  +QAQ++A+A I  LR+ GN Y F+ D     ++HPI + LVGQ   N 
Sbjct: 61  EYDAAQRGEISTDQAQKRAEARIAKLRYGGNEYFFITDMQSKMLMHPIAKQLVGQDQSN- 119

Query: 116 GKDTEGQFWFT-MIDLARNGQQGSLIYPW-KNQQGNPADKLSFVNGFAPWGWILGSGMLL 173
            KD  G+  F  M++  R    G + Y W K     P  KL+FV GF PWGW++G+G+ +
Sbjct: 120 AKDPNGKMLFVEMVNTVRRSGSGFVDYVWPKPGSDKPQPKLTFVAGFEPWGWVIGTGVYI 179

Query: 174 DDIEHAVYQQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQGDLTAQIP 233
           DD++   +    R   A  +V L+ I + V ++R + +P+  +   MK +A G +  ++P
Sbjct: 180 DDLDAQTWSAMQRSLIAATLVLLITIAVSVFMARRITRPILAMTGAMKDLAGGRIDIEVP 239

Query: 234 VLGK-DELGIVAQRIN-------------------------------NSIAAVHD----A 257
            +G+ DE+G +A+ +                                N +A   +     
Sbjct: 240 GIGRHDEIGEMAEAVEVFKLNAQERRRLEGERQEIEARAEAERRAHANQVAEAFERAIGE 299

Query: 258 LVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMNQMTATVADVAGHAEDT 317
           +VE+V +AS   EA+    +   E SQ +       + +A A  + +  V  VA   E+ 
Sbjct: 300 IVETVSAASDELEASATTLTRTAEQSQELA------TAVAAASEEASTNVQSVASATEEM 353

Query: 318 ARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQISEVTSVISGIS 377
           +    + S++     +  H +VD  R           +V +L +   +I +V  +IS I+
Sbjct: 354 SSSVNEISRQVQESARIAHEAVDQARQ-------TNGRVEELAKAASRIGDVVELISNIA 406

Query: 378 EQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMINRLQQLAVSTA 437
            QTNLLALNA IEAARAG+ GRGFAVVA EV+ LA +T  +T EI   IN +        
Sbjct: 407 GQTNLLALNATIEAARAGEAGRGFAVVASEVKALAEQTAKATGEITLQINGI-------- 458

Query: 438 SAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNVS 497
                 QA    SVA  +  G         I  +S+ ++ IA+A EEQ A  +E++RNV 
Sbjct: 459 ------QAATDQSVAAIKEIGET-------IAKMSEISSTIASAVEEQGAATQEISRNV- 504

Query: 498 GINDAALEMSQAATYLAEESEKLADLSRQLDQKLTAFK 535
               A+L   Q ++ + +      +      Q L A K
Sbjct: 505 --QQASLGTQQVSSNITDVQRGATETGAASAQVLAAAK 540



 Score = 32.0 bits (71), Expect = 6e-05
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 241 GIVAQRINNSIAAVHD---ALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLA 297
           G +  +IN   AA      A+ E  ++ + ++E +  IAS+ EE   A       + Q +
Sbjct: 449 GEITLQINGIQAATDQSVAAIKEIGETIAKMSEISSTIASAVEEQGAATQEISRNVQQAS 508

Query: 298 TAMNQMTATVADVAGHAEDT---ARDTLDASK----EANLGDKDVHSSVDSIRA 344
               Q+++ + DV   A +T   +   L A+K    ++N    +V + +DS+RA
Sbjct: 509 LGTQQVSSNITDVQRGATETGAASAQVLAAAKSLSGDSNRLKVEVSNFLDSVRA 562