Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  224 bits (570), Expect = 1e-62
 Identities = 140/347 (40%), Positives = 212/347 (61%), Gaps = 4/347 (1%)

Query: 192 LIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVA--QGDLTAQIPVLGKDELGIVAQRINN 249
           +IV+L+ +    ++ R+++ PL  I+  ++ +A  +GDLT Q+ V    EL  +   IN 
Sbjct: 359 VIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTVESHAELIALGGGING 418

Query: 250 SIAAVHDALVESVQSASSVAEAAIRIASS-AEETSQAVVSQRDQLSQLATAMNQMTATVA 308
            I  +   L+  ++  +S ++A  ++A+  A++T  +V  Q   +  + TA+N+M+AT  
Sbjct: 419 FINKLR-LLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDIESVVTAVNEMSATAL 477

Query: 309 DVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQISE 368
           +VA  +E TA +T   +     G+  +  ++  +  +S E  +A + V K+ E    IS+
Sbjct: 478 EVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKVAESSTNISK 537

Query: 369 VTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMINR 428
           +  VIS I+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR LAS+T  STDEI  +I  
Sbjct: 538 ILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDEIGKLIEA 597

Query: 429 LQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKATQIATAAEEQSAV 488
           LQ+   S +  + +    A  +VA  E+A S L+ IVN IQ VS + T IATAAEEQSAV
Sbjct: 598 LQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIATAAEEQSAV 657

Query: 489 AEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKLTAFK 535
            EE++RN++GI+D+A E+++ A    + S  LA L  Q  Q+L   K
Sbjct: 658 TEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGKLK 704