Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  282 bits (721), Expect = 3e-80
 Identities = 193/543 (35%), Positives = 302/543 (55%), Gaps = 20/543 (3%)

Query: 8   KVSYKLAAIVIVGIVGFLSLLFISANA-LKENLVAEREARLKA---VIQSTLSQVAYLNQ 63
           K++++L  ++++ IV    ++F+ A A ++E LV E++A+L A   V +  +SQ    +Q
Sbjct: 12  KIAHRLLFMLLLAIVA-TGIMFVFALANIEEVLVKEKQAKLSALSDVGEKVISQFYEASQ 70

Query: 64  --TLPKEQAQEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNPGKDTEG 121
             ++ +E+A+  A A ++ALR++GN Y + ID     V H   + LVG  +    KD  G
Sbjct: 71  AGSMSEEEAKRNAIAALDALRYEGNEYFWTIDRQGIMVQHAFAKKLVGTNVLGM-KDPNG 129

Query: 122 QFWFT-MIDLARNGQQGSLIYPWKNQQGN-PADKLSFVNGFAPWGWILGSGMLLDDIEH- 178
              F  M+    N     + Y W     + P+ K+S V  F PWGWI+G+G+ +DDI+  
Sbjct: 130 VRLFEKMVTGTANSDYALIEYMWNRPNASAPSPKMSVVKRFTPWGWIVGTGIYVDDIQEE 189

Query: 179 --AVYQQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVA--QGDLTAQIPV 234
             A   ++L +  A  +  ++++G   VISR++  P+       + +A  +GDLT ++  
Sbjct: 190 MQAFIYKYLLICIAVWLPVILILG---VISRSISAPMADTIAAFENIARGEGDLTLRLEE 246

Query: 235 LGKDELGIVAQRINNSIAAVHDALVESVQ-SASSVAEAAIRIASSAEETSQAVVSQRDQL 293
            G+DEL  VA   N  +A +  ALV SV  S +   E A  +A  + + S    + + + 
Sbjct: 247 SGRDELKQVAASFNEFVAKIQ-ALVNSVSASVTHSRELAEGLADISAQASMVTANMQAET 305

Query: 294 SQLATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVAT 353
             +ATA+N+M+   ++VA +A+  A     A  EA+     V  +V  I+ LS EL V  
Sbjct: 306 QSVATAINEMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTA 365

Query: 354 DQVNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLAS 413
           D+   L+    +I ++  VI GI+EQTNLLALNAAIEAARAG+ GRGFAVVADEVR LAS
Sbjct: 366 DEAQALQISSGKIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLAS 425

Query: 414 RTHHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSD 473
           RT  ST EI  +I  ++    S  +++ +++A +  +V         L  I + I+ +SD
Sbjct: 426 RTQESTQEINAIIEAIRASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISD 485

Query: 474 KATQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKLTA 533
              QIATA EEQSAV  E+N NV+ IND +LE  Q +  +   SE++   S  L+  ++ 
Sbjct: 486 MNIQIATATEEQSAVIAELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLIST 545

Query: 534 FKL 536
           FKL
Sbjct: 546 FKL 548