Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  253 bits (646), Expect = 1e-71
 Identities = 178/541 (32%), Positives = 282/541 (52%), Gaps = 30/541 (5%)

Query: 21  IVGFLSLLFIS----ANALKEN-------LVAEREARLKAVIQSTLSQVAYLNQTLPKEQ 69
           I+ FL L+ I+    +N+L+EN       L +ER+A+LK  +   L  V +    L    
Sbjct: 19  ILSFLFLVSITYNLESNSLEENMSTFKASLYSERKAQLKDQVDIALDIVEH---QLSLGT 75

Query: 70  AQEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNPGKDTEGQFWFTMID 129
           A +  KAL N +RF    Y F+ D   +   H ++  L G            +    +ID
Sbjct: 76  AGDVNKALRN-VRFGTAGYFFIYDFDGFNRFHAVKPALEGTAQIGMTDPNGKKIVVGLID 134

Query: 130 LARNGQQGSLIYPW-KNQQGNPADKLSFVNGFAPWGWILGSGMLLDDIEHAV--YQQFLR 186
            AR+G  G   Y + K        K+ +        WILG+G   DDI+  V  Y++ + 
Sbjct: 135 AARSGD-GFFNYDYSKPGVTGLVPKIGYAATVPGKDWILGTGAYTDDIDAQVESYREVMT 193

Query: 187 M-----GFATLIVTLVMIGLGVVI----SRAVIQPLDTIKDVMKKVA--QGDLTAQIPVL 235
                     L+  LV++ +  V+    ++ ++ P+  +   ++ +A  +GDLT ++ V 
Sbjct: 194 KHMNDKAMMILLFALVLVAITAVVMLVAAQRMVNPIHNMVQNLEDIAKGEGDLTKRLDVQ 253

Query: 236 GKDELGIVAQRINNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQ 295
           G DE+ ++ +  N  +  +   + +  ++   V   A  I+S     +Q ++S  ++  Q
Sbjct: 254 GSDEIAMLGRAFNQFVDKLQGIIKDVARATVEVKSGADNISSQTAAMAQQLISHNNETDQ 313

Query: 296 LATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQ 355
           + TA+ +M+AT ++VA      A  T  A+++     + V SS+  +  L  E+ +A   
Sbjct: 314 VVTAITEMSATASEVAMSTTQVAEATQAATQDVGNAQECVDSSLHEVSTLMAEIDMAAGH 373

Query: 356 VNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRT 415
           +N L E   +I+ V SVI GI+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR+LASRT
Sbjct: 374 INSLNEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRT 433

Query: 416 HHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKA 475
             ST EI  M++ L  L     S+M+ SQ     SV ++      L  + + +  ++D +
Sbjct: 434 QASTLEINEMLSELHNLVSLAVSSMESSQQSCHRSVTSSRAISDSLGAVTSAVTSINDMS 493

Query: 476 TQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKLTAFK 535
           TQIATAA EQS+V EE+NRNV  I +   E+ QA+   ++ S+ LA+  R LD  +  FK
Sbjct: 494 TQIATAATEQSSVTEEINRNVFAIQEIVNELLQASNSASDTSQGLANEGRNLDTLVGQFK 553

Query: 536 L 536
           +
Sbjct: 554 V 554