Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  244 bits (622), Expect = 8e-69
 Identities = 157/541 (29%), Positives = 270/541 (49%), Gaps = 8/541 (1%)

Query: 4   LENIKVSYKLAAIVIVGIVGFLSLLFISANALKENLVAEREARLKAVIQSTLSQVAYLNQ 63
           L    +  +L  ++++  +G +     S      NL+ ++  ++   + S LS +    Q
Sbjct: 5   LRQFTILKRLMMMLVMAAIGTVCFASFSIKEQYSNLIEQKWLQIDGQLGSILSVIDVYRQ 64

Query: 64  T-----LPKEQAQEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNPGKD 118
                 + +++AQ+ A +LIN  R+ G  Y  +ID++   + H     ++G    N    
Sbjct: 65  DAASGKMREQEAQKAAASLINQTRYAGVGYFILIDDNNQILAHGESASMIGTSAQNFTLP 124

Query: 119 TEGQFWFTMIDLARNGQQGSLIYPWKNQQGNPA-DKLSFVNGFAPWGWILGSGMLLDDIE 177
                  T++  AR   + +L YP  N       DKL+    +  WGW L +G  L D++
Sbjct: 125 NGTNPLTTLLSQARQNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAYLSDVK 184

Query: 178 HAVYQQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQG--DLTAQIPVL 235
            ++Y+  +       ++++ +    +V++ ++  PL+   + ++ +AQG  DL+ ++   
Sbjct: 185 ESLYEVMVDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGEGDLSQRLSTQ 244

Query: 236 GKDELGIVAQRINNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQ 295
           GKDE+  +A   N     + D +        S+   A  +  + EE++Q+      +   
Sbjct: 245 GKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETGS 304

Query: 296 LATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQ 355
           +ATA+NQM +T  ++A + +  A        +A      + ++V     L  EL  +   
Sbjct: 305 VATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAI 364

Query: 356 VNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRT 415
             KL +   QI  +  VI  I+EQTNLLALNAAIEAARAG  GRGFAVVADEVR LA+RT
Sbjct: 365 TQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRT 424

Query: 416 HHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKA 475
             ST+EIQ +I+ +Q    S   +  ++Q  +    A A+ AG  ++ I+  I H+SD  
Sbjct: 425 QDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDMN 484

Query: 476 TQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKLTAFK 535
           TQ+A+A EEQS V EE+NRN+  I++      +A    +  ++ L D+S+ +   L  FK
Sbjct: 485 TQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQSLQDISQDMSHTLGQFK 544

Query: 536 L 536
           +
Sbjct: 545 I 545