Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  243 bits (619), Expect = 2e-68
 Identities = 158/514 (30%), Positives = 256/514 (49%), Gaps = 17/514 (3%)

Query: 36  KENLVAEREARLKAVIQSTLSQVAYLNQTLPKEQAQEQAKALINALRFDGNNYMFVIDES 95
           +  LV ER+ ++K   +     V Y      K    +     +  +RF    Y F+ D  
Sbjct: 45  RTKLVGERKQQIKEATEIASGIVNYQLSLKDKGNVNQA----LRDIRFGSAGYFFMYDSQ 100

Query: 96  RYTVVHPIRQDLVGQQMGNPGKDTEGQFWFTMIDLARNGQQGSLIYPWKNQQGNPADKLS 155
              + H +  +L GQ   +       +    ++D A+ G      Y  K       +K+S
Sbjct: 101 GKNIFHALMPNLEGQNKIDMTDPRGTKIIVGLLDAAKRGDGNFSYYYQKPNTNEQIEKIS 160

Query: 156 FVNGFAPWGWILGSGMLLDDIE-------HAVYQQFLRMGFATLIVTLVMIGLG----VV 204
           FV       W+LG+G  +DDIE         V +Q        L++ LV+ G      +V
Sbjct: 161 FVMMVPGTDWMLGTGAYIDDIEAVVEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMV 220

Query: 205 ISRAVIQPLDTIKDVMKKVA--QGDLTAQIPVLGKDELGIVAQRINNSIAAVHDALVESV 262
            +  ++ P+  + D +  +A  +GDLT ++ V G+DE+  + +  N  +  +   + +  
Sbjct: 221 AAHRMVVPIKNMADNLNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVA 280

Query: 263 QSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMNQMTATVADVAGHAEDTARDTL 322
            + + V  AA  I    +  S  ++S  ++  Q+ TA+ +M++T ++VA +    A  T 
Sbjct: 281 SATAKVKTAANAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQ 340

Query: 323 DASKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQISEVTSVISGISEQTNL 382
            A+ +     + V +S++ I AL  ++  A   +  L E   +I+ V SVI GI+EQTNL
Sbjct: 341 AATGDVANAQRCVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNL 400

Query: 383 LALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMINRLQQLAVSTASAMQK 442
           LALNAAIEAARAG+QGRGFAVVADEVR+LASRT  ST EI  M++ L +L       M +
Sbjct: 401 LALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDE 460

Query: 443 SQALAANSVATAENAGSDLSLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNVSGINDA 502
           SQ     SV ++      L  + + +  ++D +TQIATAA EQS+V EE+NRNV  I + 
Sbjct: 461 SQQSCVRSVESSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEI 520

Query: 503 ALEMSQAATYLAEESEKLADLSRQLDQKLTAFKL 536
             E+  ++ + A  S+ ++     L   +  FK+
Sbjct: 521 VNELLHSSEHAARVSQTVSQEGTNLGNLVGQFKI 554