Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  248 bits (632), Expect = 6e-70
 Identities = 168/555 (30%), Positives = 274/555 (49%), Gaps = 24/555 (4%)

Query: 2   LKLENIKVSYKLAAIVIVGIVGFLSLLFISANALKEN-------LVAEREARLKAVIQST 54
           L L N  +   L  +++  +V      ++   +L E        LV ER+ ++K   +  
Sbjct: 4   LSLRNKLLLLSLFPLILTLLVLMTVSYYVEQESLAEEVVTFRTKLVGERKQQIKEATEIA 63

Query: 55  LSQVAYLNQTLPKEQAQEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGN 114
              V Y  Q   K+Q        +  +RF    Y F+ D     + H +  +L GQ   +
Sbjct: 64  AGIVQY--QLSLKDQGN--VNQALRDIRFGSAGYFFIYDSQGKNIFHALMPNLEGQNKID 119

Query: 115 PGKDTEGQFWFTMIDLARNGQQGSLIYPWKNQQGNPADKLSFVNGFAPWGWILGSGMLLD 174
                  +    ++D A+ G      Y  K       +K+S+V       W+LG+G  +D
Sbjct: 120 MTDPRGTKIIVGLLDAAKRGDGNFSYYYQKPNTNEQIEKISYVMMVPGTDWMLGTGAYID 179

Query: 175 DIE-------HAVYQQFLRMGFATLIVTLVMIGLG----VVISRAVIQPLDTIKDVMKKV 223
           DIE         V +Q     F  L++ LV+ G+     +V +  ++ P+  + D +  +
Sbjct: 180 DIEAVVEDYRQTVTEQMADKSFMILLIALVLTGITAFIIMVAAHRMVVPIKNMADSLNDI 239

Query: 224 A--QGDLTAQIPVLGKDELGIVAQRINNSIAAVHDALVESVQSASSVAEAAIRIASSAEE 281
           A  +GDLT ++ V G+DE+  + Q  N  +  +   + +   + + V  AA  I    + 
Sbjct: 240 AKGEGDLTKRLSVKGEDEIAQLGQAFNLFVDKLQTIIGDVANATAKVKSAANAIHDQTKV 299

Query: 282 TSQAVVSQRDQLSQLATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDS 341
            S  ++S  ++  Q+ TA+ +M++T ++VA +    A  T  A+ +     + V +S++ 
Sbjct: 300 MSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLEE 359

Query: 342 IRALSVELGVATDQVNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGF 401
           I  L  ++  A   +  L E   +I+ V SVI GI+EQTNLLALNAAIEAARAG+QGRGF
Sbjct: 360 IAGLMSQINNAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGF 419

Query: 402 AVVADEVRNLASRTHHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDL 461
           AVVADEVRNLASRT  ST EI  M++ L +L       M +SQ     SV ++      L
Sbjct: 420 AVVADEVRNLASRTQASTLEINEMLSELHKLVSVAVKTMDESQQSCVRSVDSSRAISESL 479

Query: 462 SLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLA 521
             + + +  ++D +TQIATAA EQS+V EE+NRNV  I +   E+  ++   A+ S+ ++
Sbjct: 480 GSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEDAAKVSQTVS 539

Query: 522 DLSRQLDQKLTAFKL 536
                L + +  FK+
Sbjct: 540 QEGINLGKLVGQFKI 554