Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  247 bits (631), Expect = 7e-70
 Identities = 164/541 (30%), Positives = 269/541 (49%), Gaps = 8/541 (1%)

Query: 4   LENIKVSYKLAAIVIVGIVGFLSLLFISANALKENLVAEREARLKAVIQSTLSQVAY--- 60
           L    +  +L  ++++  +G +     S      NL+ ++  ++   + S LS +     
Sbjct: 5   LRRFTILQRLMMMLVMAAIGTVCFASFSIKEQYSNLIEQKWQQIDGQLGSLLSVIDIHRQ 64

Query: 61  --LNQTLPKEQAQEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNPGKD 118
             L+  L + +AQ+ A  LI+  R+ G  Y  VID++   + H  R DL+G    N    
Sbjct: 65  DALSGKLSEAEAQQAAANLIDQTRYAGVGYFIVIDDNNQILAHGERSDLIGTSALNFKLQ 124

Query: 119 TEGQFWFTMIDLARNGQQGSLIYPWKNQQG-NPADKLSFVNGFAPWGWILGSGMLLDDIE 177
                  TM+ LAR   +  L YP  N    N  DKL     +  WGW L +G  L D++
Sbjct: 125 NGTNPLATMLPLARQNGKTMLEYPIANPVSKNIEDKLVEARYYPEWGWTLITGAYLSDVK 184

Query: 178 HAVYQQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQG--DLTAQIPVL 235
            ++    +       ++++ +    +V++ ++  PL+   D ++ +AQG  DL+ ++   
Sbjct: 185 QSLKAVIIDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIDALEDIAQGEGDLSQRLSTQ 244

Query: 236 GKDELGIVAQRINNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQ 295
           GKDE+  +A   N     + D +        S+   A ++  + EE++Q+      +   
Sbjct: 245 GKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKQLMLAVEESNQSAEHIHRETGS 304

Query: 296 LATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQ 355
           +ATA+NQM +T  ++A + +  A        +A      +  +V     L  EL  +   
Sbjct: 305 VATAVNQMLSTTHEMASNTQQAADAANSVKNQAQQSQAVIDDTVRDTEKLVQELRASEVI 364

Query: 356 VNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRT 415
             KL +   QI  +  VI  I+EQTNLLALNAAIEAARAG  GRGFAVVADEVR LA+RT
Sbjct: 365 TQKLGQSSAQIGSILDVIRSIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRT 424

Query: 416 HHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKA 475
             ST+EIQ +I+ +Q    S   +  ++Q  +    A A  AG+ ++ I+  I H+SD  
Sbjct: 425 QDSTNEIQKIISDIQMGVNSVMKSNSQTQTQSDELQAKAREAGNAMAAILQLIAHISDMN 484

Query: 476 TQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKLTAFK 535
           TQ+A+A EEQS V EE+NRN+  I++      +A    +  ++ L D+S+ +   L  FK
Sbjct: 485 TQLASATEEQSLVTEEINRNICNISELTEVSVKANEGNSRAAQSLQDISQDMSHTLGQFK 544

Query: 536 L 536
           +
Sbjct: 545 I 545