Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  234 bits (598), Expect = 6e-66
 Identities = 175/512 (34%), Positives = 267/512 (52%), Gaps = 26/512 (5%)

Query: 29  FISANALKENLVAEREARLKAVIQSTLSQVAYLNQTLPKEQAQEQAKALINALRFDGNNY 88
           ++SA  LK+ +V   E      +  +L  VA  N T+      +Q    +  L+  G  Y
Sbjct: 141 YVSAT-LKKQVVTIAEP---VTVSGSLFGVAAANLTI------DQLTDAVQRLQVPGKGY 190

Query: 89  MFVIDESRYTVVHPIRQDLVGQQMGNPGKDTEGQFWFTMIDLARNGQQGSLIYPWKNQQG 148
             ++D++   + HP +  L  +Q+            FT   L++     +L    + ++ 
Sbjct: 191 TIMVDKTGLIISHP-KSQLNNEQLNKIDNS------FTPSWLSQRANANTL----EEREL 239

Query: 149 NPADKLSFVNGFAPWGWILGSGMLLDDIEHAVYQQFLRMGFATLIVTLVMIGLGVV-ISR 207
           +   +L +V       W L   M  D+I          M  A     LV+ GL +V I +
Sbjct: 240 DGETQLIYVAAVPSTDWELVFVMNKDEIMSQATTLAWWMS-AVGAGLLVIFGLVLVAIFK 298

Query: 208 AVIQPLDTIKDVMKKVAQGD--LTAQIPVLGK-DELGIVAQRINNSIAAVHDALVESVQS 264
              + L+ +   +  +A+GD  LT +I      DE+GI+A   N  +  +H  +    + 
Sbjct: 299 IQFKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHKI 358

Query: 265 ASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMNQMTATVADVAGHAEDTARDTLDA 324
           A  +   A   ++SA + SQ +  Q+D+++ +ATA+ +M +   ++A +AE TA+   DA
Sbjct: 359 AGQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQDA 418

Query: 325 SKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQISEVTSVISGISEQTNLLA 384
              +N G K V  S  SIR L+ E+  A   +++L E   +I+ +   ISGI+EQTNLLA
Sbjct: 419 VGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLA 478

Query: 385 LNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMINRLQQLAVSTASAMQKSQ 444
           LNAAIEAARAG+QGRGFAVVADEVR L+ RTH ST EIQ MI  LQQ A     +M +S 
Sbjct: 479 LNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSH 538

Query: 445 ALAANSVATAENAGSDLSLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNVSGINDAAL 504
            +A  SVA A +A   L  I   I  +SD A+QIATAAEEQ++V  E+NRN   I + + 
Sbjct: 539 DMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSE 598

Query: 505 EMSQAATYLAEESEKLADLSRQLDQKLTAFKL 536
            +S  A     ++++LA L+  L Q++  FKL
Sbjct: 599 NLSIEAQSSMVQAQELAHLAASLQQEVGRFKL 630