Pairwise Alignments

Query, 335 a.a., vitamin B12 ABC transporter permease BtuC from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., transport system permease protein (RefSeq) from Shewanella loihica PV-4

 Score =  161 bits (407), Expect = 3e-44
 Identities = 103/279 (36%), Positives = 157/279 (56%), Gaps = 9/279 (3%)

Query: 56  QLVWELRLPRLLAAAVIGASLAVAGATLQVLLGNVLAEPGVVGVSGGASVAMVILLLFFP 115
           +++ ELRLPR+L A + G  LA+AGA LQ +  N LA+P + G+S GAS+  V+++    
Sbjct: 66  RILIELRLPRILLAFIAGFGLALAGAVLQTVTRNPLADPYLFGISSGASLGAVVVITLLG 125

Query: 116 SLNSPVAFMA---AAVLGALLFTLL-LVVMARKLRLTTARLLLVGVALGILSGAVVTWAF 171
            +   +A +     A +GA L  L+ L +  R L     R+LL GVA+  L GA+ +   
Sbjct: 126 GVGGALASVGLPLGAFIGASLAVLMVLALCGRDLNTQIERMLLSGVAISFLFGALASLML 185

Query: 172 YFSDDLGLRQLMYWLMGSVAGVSWYQHLLS--LVAVPVVIWLVLQGGVLDKLMLGEGHAK 229
           YFS       +++W +GS A  SW    L   LV     I L+L+  +L  +  G+  A 
Sbjct: 186 YFSGPQSAASVLFWSLGSFAKASWQMLWLPWLLVLAASAILLLLKRQIL-AIQAGDETAH 244

Query: 230 QLGIDIHRVRWRLILAIALLVGASVALGGVIGFVGLVVPHLLRLTLGSENRLLLPLSALC 289
            LGI + R+R   +L  +L+    VA  G IGFVGL+VPH++RL L    R  L L+AL 
Sbjct: 245 TLGIRVQRLRLVSLLLCSLITAVLVANCGGIGFVGLMVPHMVRLLL--PGRFALLLTALV 302

Query: 290 GALLLVSADLIARLALGSGELPLGVVTTTLGAPIFIWML 328
           G L ++  D++AR  L   ELP+G++T  +G+  F+++L
Sbjct: 303 GGLFMIWVDVLARCLLSYQELPVGIITAVIGSLFFLFIL 341